hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06124394/chunk_1/iprscan-20080502-06124394.nocrc
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Query sequence: KIAA0550
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                 208.8    4.8e-58   4
SM00303                                                  86.7    2.8e-21   1
SM00008                                                  84.3    1.5e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00209    1/4     296   345 ..     1    66 []    55.7  5.9e-12
SM00209    2/4     350   400 ..     1    66 []    58.2  1.1e-12
SM00209    3/4     405   455 ..     1    66 []    52.2  6.8e-11
SM00209    4/4     460   510 ..     1    66 []    42.7  4.8e-08
SM00008    1/1     512   578 ..     1    89 []    84.3  1.5e-20
SM00303    1/1     817   870 ..     1    51 []    86.7  2.8e-21

Alignments of top-scoring domains:
SM00209: domain 1 of 4, from 296 to 345: score 55.7, E = 5.9e-12
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      + eWs WS+CS vtCG G      ++RtR+    c+sp +       
    KIAA0550   296    VEEWSQWSTCS-VTCGQG-----SQVRTRT----CVSPYG------- 325  

                   epCs....EtrpCntqpnLqpCp<-*
                    +Cs++ +E+r Cn     + Cp   
    KIAA0550   326 THCSgplrESRVCNNT---ALCP    345  

SM00209: domain 2 of 4, from 350 to 400: score 58.2, E = 1.1e-12
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eWs+WS CS  tCG+G      rtRtR      c pp+     gg
    KIAA0550   350    WEEWSPWSLCS-FTCGRG-----QRTRTR-----SCTPPQ----YGG 381  

                   epCs....EtrpCntqpnLqpCp<-*
                   +pC+++++  +pCn       Cp   
    KIAA0550   382 RPCEgpetHHKPCNIA----LCP    400  

SM00209: domain 3 of 4, from 405 to 455: score 52.2, E = 6.8e-11
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eWs+WS+CS vtC  G     +++R+R+    c  +       gg
    KIAA0550   405    WQEWSSWSQCS-VTCSNG-----TQQRSRQ----CTAA-----AHGG 436  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C ++  E+r+C  +    +C    
    KIAA0550   437 SECRgpwaESRECYNP----ECT    455  

SM00209: domain 4 of 4, from 460 to 510: score 42.7, E = 4.8e-08
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +W+ WS CS ++C gG     + +R R+    c  +        g
    KIAA0550   460    WNQWGHWSGCS-KSCDGG-----WERRIRT----CQGAVIT-----G 491  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C+++++E+r C++q     Cp   
    KIAA0550   492 QQCEgtgeEVRRCSEQ----RCP    510  

SM00008: domain 1 of 1, from 512 to 578: score 84.3, E = 1.5e-20
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                      +++ Cp+++ + + W++TpaG l++++CP +++g+            
    KIAA0550   512    PYEICPEDYLMSMVWKRTPAGDLAFNQCPLNATGT------------ 546  

                   asRnCtedt.GvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                    sR+C+++++Gv+ W++           p +++C sn+y++l+   
    KIAA0550   547 TSRRCSLSLhGVAFWEQ-----------PSFARCISNEYRHLQ    578  

SM00303: domain 1 of 1, from 817 to 870: score 86.7, E = 2.8e-21
                   *->snpiCvfWdese....tgeWstrGCelvetnkpthttCsCnHLTsFA
                       np+Cv Wd s++++++g+Wst+GC++v t++ +ht C+C++L++FA
    KIAA0550   817    LNPYCVLWDDSKtnesLGTWSTQGCKTVLTDA-SHTKCLCDRLSTFA 862  

                   vLmdvspn<-*
                   +L+++++    
    KIAA0550   863 ILAQQPRE    870  

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