hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06124394/chunk_1/iprscan-20080502-06124394.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0550 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00002.15.ls 7 transmembrane receptor (Secretin family) 308.3 1.3e-89 1 PF00002.15.fs 7 transmembrane receptor (Secretin family) 306.3 5.1e-89 1 PF00090.9.fs Thrombospondin type 1 domain 187.4 9.3e-56 4 PF00090.9.ls Thrombospondin type 1 domain 194.8 1.9e-55 4 PF01825.11.fs Latrophilin/CL-1-like GPS domain 76.3 6.1e-22 1 PF01825.11.ls Latrophilin/CL-1-like GPS domain 78.3 2.2e-20 1 PF02793.12.fs Hormone receptor domain 59.1 1.6e-15 1 PF02793.12.ls Hormone receptor domain 60.9 4e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00090.9.fs 1/4 297 344 .. 1 55 [] 60.0 2e-17 PF00090.9.ls 1/4 297 344 .. 1 55 [] 61.9 2e-15 PF00090.9.fs 2/4 351 399 .. 1 55 [] 49.4 3.3e-14 PF00090.9.ls 2/4 351 399 .. 1 55 [] 51.3 3.1e-12 PF00090.9.fs 3/4 406 454 .. 1 55 [] 51.7 6.4e-15 PF00090.9.ls 3/4 406 454 .. 1 55 [] 53.6 6e-13 PF00090.9.ls 4/4 461 509 .. 1 55 [] 28.1 2.5e-05 PF00090.9.fs 4/4 461 509 .. 1 55 [] 26.2 3.1e-07 PF02793.12.ls 1/1 513 574 .. 1 78 [] 60.9 4e-15 PF02793.12.fs 1/1 513 574 .. 1 78 [] 59.1 1.6e-15 PF01825.11.ls 1/1 817 865 .. 1 48 [] 78.3 2.2e-20 PF01825.11.fs 1/1 817 865 .. 1 48 [] 76.3 6.1e-22 PF00002.15.fs 1/1 876 1156 .. 1 293 [] 306.3 5.1e-89 PF00002.15.ls 1/1 876 1156 .. 1 293 [] 308.3 1.3e-89 Alignments of top-scoring domains: PF00090.9.fs: domain 1 of 4, from 297 to 344: score 60.0, E = 2e-17 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +Ws+WS CSVTCG G+++R+R+c+sp g +C g+ +e ++ KIAA0550 297 EEWSQWSTCSVTCGQGSQVRTRTCVSPY-----GTHCSGPLRE--SR 336 aCdmmdkC<-* +C++ C KIAA0550 337 VCNNTALC 344 PF00090.9.ls: domain 1 of 4, from 297 to 344: score 61.9, E = 2e-15 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +Ws+WS CSVTCG G+++R+R+c+sp g +C g+ +e ++ KIAA0550 297 EEWSQWSTCSVTCGQGSQVRTRTCVSPY-----GTHCSGPLRE--SR 336 aCdmmdkC<-* +C++ C KIAA0550 337 VCNNTALC 344 PF00090.9.fs: domain 2 of 4, from 351 to 399: score 49.4, E = 3.3e-14 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +Ws+WS CS TCG G+rtR+R+c p Pq +gg pC+g+ + + KIAA0550 351 EEWSPWSLCSFTCGRGQRTRTRSCT-P-PQ-YGGRPCEGPETH--HK 392 aCdmmdkC<-* +C + C KIAA0550 393 PC-NIALC 399 PF00090.9.ls: domain 2 of 4, from 351 to 399: score 51.3, E = 3.1e-12 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +Ws+WS CS TCG G+rtR+R+c p Pq +gg pC+g+ + + KIAA0550 351 EEWSPWSLCSFTCGRGQRTRTRSCT-P-PQ-YGGRPCEGPETH--HK 392 aCdmmdkC<-* +C + C KIAA0550 393 PC-NIALC 399 PF00090.9.fs: domain 3 of 4, from 406 to 454: score 51.7, E = 6.4e-15 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +Ws WS+CSVTC++G+++R R c + a +gg+ C g+ e ++ KIAA0550 406 QEWSSWSQCSVTCSNGTQQRSRQCTAAA---HGGSECRGPWAE--SR 447 aCdmmdkC<-* C ++C KIAA0550 448 EC-YNPEC 454 PF00090.9.ls: domain 3 of 4, from 406 to 454: score 53.6, E = 6e-13 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +Ws WS+CSVTC++G+++R R c + a +gg+ C g+ e ++ KIAA0550 406 QEWSSWSQCSVTCSNGTQQRSRQCTAAA---HGGSECRGPWAE--SR 447 aCdmmdkC<-* C ++C KIAA0550 448 EC-YNPEC 454 PF00090.9.ls: domain 4 of 4, from 461 to 509: score 28.1, E = 2.5e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W+ WS CS++C +G R+R+c++ + g++C+g+ +e ++ KIAA0550 461 NQWGHWSGCSKSCDGGWERRIRTCQGAV---ITGQQCEGTGEE--VR 502 aCdmmdkC<-* C + + C KIAA0550 503 RC-SEQRC 509 PF00090.9.fs: domain 4 of 4, from 461 to 509: score 26.2, E = 3.1e-07 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +W+ WS CS++C +G R+R+c++ + g++C+g+ +e ++ KIAA0550 461 NQWGHWSGCSKSCDGGWERRIRTCQGAV---ITGQQCEGTGEE--VR 502 aCdmmdkC<-* C + + C KIAA0550 503 RC-SEQRC 509 PF02793.12.ls: domain 1 of 1, from 513 to 574: score 60.9, E = 4e-15 *->glgCprtwDgitCWPrtpaGqlvvvpCPdyfsgfnydttgdfssgna ++ Cp ++ +++ W+rtpaG l+ ++CP ++ g+ + KIAA0550 513 YEICPEDYLMSMVWKRTPAGDLAFNQCPLNATGT-----------TS 548 yRnClenGwwerhpnsnwpwpnysaCtspey<-* +R+ l+ ++ + w+ p +++C+s+ey KIAA0550 549 RRCSLSLHGVA-----FWEQPSFARCISNEY 574 PF02793.12.fs: domain 1 of 1, from 513 to 574: score 59.1, E = 1.6e-15 *->glgCprtwDgitCWPrtpaGqlvvvpCPdyfsgfnydttgdfssgna ++ Cp ++ +++ W+rtpaG l+ ++CP ++ g+ + KIAA0550 513 YEICPEDYLMSMVWKRTPAGDLAFNQCPLNATGT-----------TS 548 yRnClenGwwerhpnsnwpwpnysaCtspey<-* +R+ l+ ++ + w+ p +++C+s+ey KIAA0550 549 RRCSLSLHGVA-----FWEQPSFARCISNEY 574 PF01825.11.ls: domain 1 of 1, from 817 to 865: score 78.3, E = 2.2e-20 *->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA np Cv Wd s+++++ G+Wst+GC++ v ++++ht+ClC++L++FA KIAA0550 817 LNPYCVLWDDSKtNESlGTWSTQGCKT-VLTDASHTKCLCDRLSTFA 862 vLm<-* +L KIAA0550 863 ILA 865 PF01825.11.fs: domain 1 of 1, from 817 to 865: score 76.3, E = 6.1e-22 *->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA np Cv Wd s+++++ G+Wst+GC++ v ++++ht+ClC++L++FA KIAA0550 817 LNPYCVLWDDSKtNESlGTWSTQGCKT-VLTDASHTKCLCDRLSTFA 862 vLm<-* +L KIAA0550 863 ILA 865 PF00002.15.fs: domain 1 of 1, from 876 to 1156: score 306.3, E = 5.1e-89 *->lllLkviytVGyslS.LvaLllAiaifllFRkLhCtRNyIHlNLfaS +++v +VG +lS L+ +lA+++ l+R ++++R++I++N+++S KIAA0550 876 SGTPSVTLIVGSGLScLALITLAVVYAALWRYIRSERSIILINFCLS 922 fiLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC +i ++i++l+++++++n+ C KIAA0550 923 IISSNILILVGQTQTHNKSI-----------------------------C 943 kvvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliG ++ ++flh+ffla+F+W+L+E+++ ++++ t + + r++++++l++G KIAA0550 944 TTTTAFLHFFFLASFCWVLTEAWQSYMAV--T--GKIRTRLIRKRFLCLG 989 WGvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvil WG+Pa++V+++++++++k gyg++++CWls+ +g++++ ++GP+++v+l KIAA0550 990 WGLPALVVATSVGFTRTK-GYGTDHYCWLSL--EGGLLYAFVGPAAAVVL 1036 vNfilFinilriLvqKlri.d.slspdmgetdqyrk.............. vN+++ i+++++Lv+++ i d++l++++g + + + + + + ++ KIAA0550 1037 VNMVIGILVFNKLVSRDGIlDkKLKHRAGQMSEPHSgltlkcakcgvvst 1086 ...........krlaKStLlLlPLLGitwvlflfapeddarGvssivfly + + ++ ++ +++++S++++lPLL +tw+ +++a++d+ +si+f+ KIAA0550 1087 talsattasnaMASLWSSCVVLPLLALTWMSAVLAMTDK----RSILFQI 1132 lflilnSfQGFfVavlYCFLNgEV<-* lf+++ S+QGF++ +++C L++EV KIAA0550 1133 LFAVFDSLQGFVIVMVHCILRREV 1156 PF00002.15.ls: domain 1 of 1, from 876 to 1156: score 308.3, E = 1.3e-89 *->lllLkviytVGyslS.LvaLllAiaifllFRkLhCtRNyIHlNLfaS +++v +VG +lS L+ +lA+++ l+R ++++R++I++N+++S KIAA0550 876 SGTPSVTLIVGSGLScLALITLAVVYAALWRYIRSERSIILINFCLS 922 fiLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC +i ++i++l+++++++n+ C KIAA0550 923 IISSNILILVGQTQTHNKSI-----------------------------C 943 kvvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliG ++ ++flh+ffla+F+W+L+E+++ ++++ t + + r++++++l++G KIAA0550 944 TTTTAFLHFFFLASFCWVLTEAWQSYMAV--T--GKIRTRLIRKRFLCLG 989 WGvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvil WG+Pa++V+++++++++k gyg++++CWls+ +g++++ ++GP+++v+l KIAA0550 990 WGLPALVVATSVGFTRTK-GYGTDHYCWLSL--EGGLLYAFVGPAAAVVL 1036 vNfilFinilriLvqKlri.d.slspdmgetdqyrk.............. vN+++ i+++++Lv+++ i d++l++++g + + + + + + ++ KIAA0550 1037 VNMVIGILVFNKLVSRDGIlDkKLKHRAGQMSEPHSgltlkcakcgvvst 1086 ...........krlaKStLlLlPLLGitwvlflfapeddarGvssivfly + + ++ ++ +++++S++++lPLL +tw+ +++a++d+ +si+f+ KIAA0550 1087 talsattasnaMASLWSSCVVLPLLALTWMSAVLAMTDK----RSILFQI 1132 lflilnSfQGFfVavlYCFLNgEV<-* lf+++ S+QGF++ +++C L++EV KIAA0550 1133 LFAVFDSLQGFVIVMVHCILRREV 1156 //