hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06092092/chunk_1/iprscan-20080502-06092092.nocrc
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Query sequence: KIAA0548
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00423                                                  38.8    7.4e-07   1
SM00180                                                  31.0    0.00016   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00423    1/1       9    84 ..     1    56 []    38.8  7.4e-07
SM00180    1/2      86   129 ..     1    42 []    28.8  0.00074
SM00180    2/2     132   178 ..     1    42 []     2.2      5.7

Alignments of top-scoring domains:
SM00423: domain 1 of 1, from 9 to 84: score 38.8, E = 7.4e-07
                   *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........
                      +Cs y   +Cs Cl+ +    CgWC+++++++ g+C++g+ +++ + 
    KIAA0548     9    NCSGY--CTCSHCLEQPG---CGWCTDpsntgKGKCIEGsykgpvkm 50   

                   .................erCderrgsrqnwssgpssqCp<-*
                   +++ ++++  +++  +++ C e+  sr+nws++   +Cp   
    KIAA0548    51 psqaptgnfypqpllnsSMCLED--SRYNWSFI---HCP    84   

SM00180: domain 1 of 2, from 86 to 129: score 28.8, E = 0.00074
                   *->CdCnlpppvG...CdptGqClnCkpnttGGrrCdderCapGyy....
                      C+Cn     G+++C     C++C   ttG  +C+   C  G+y++++
    KIAA0548    86    CQCN-----GhskCINQSICEKCENLTTG-KHCE--TCISGFYgdpt 124  

                   ...gC<-*
                   +++ C   
    KIAA0548   125 nggKC    129  

SM00180: domain 2 of 2, from 132 to 178: score 2.2, E = 5.7
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C Cn     G+ + C+ +tG C  C    + G+ C    C+     +
    KIAA0548   132    CKCN-----GhaslCNTnTGKCF-CTTKGVKGDECQ--LCEVENRyq 170  

                   ......gC<-*
                   +++ +++C   
    KIAA0548   171 gnplrgTC    178  

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