hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06092092/chunk_1/iprscan-20080502-06092092.nocrc
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Query sequence: KIAA0548
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF01437.15.fs Plexin repeat                                43.6    1.1e-13   1
PF01437.15.ls Plexin repeat                                45.4    1.8e-10   1
PF00053.14.fs Laminin EGF-like (Domains III and V)         36.7    5.7e-10   2
PF00053.14.ls Laminin EGF-like (Domains III and V)         37.6      4e-08   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF01437.15.ls   1/1       9    84 ..     1    63 []    45.4  1.8e-10
PF01437.15.fs   1/1       9    84 ..     1    63 []    43.6  1.1e-13
PF00053.14.fs   1/2      86   129 ..     1    59 []    27.1  3.4e-07
PF00053.14.ls   1/2      86   129 ..     1    59 []    28.8  1.7e-05
PF00053.14.ls   2/2     132   178 ..     1    59 []     8.8   0.0027

Alignments of top-scoring domains:
PF01437.15.ls: domain 1 of 1, from 9 to 84: score 45.4, E = 1.8e-10
                   *->nCsqytsCssCLaardpfyCgWCss.....egrCtrgsayt.s....
                      nCs+y +Cs+CL+ +   +CgWC ++++++ g+C+ gs +++ + ++
    KIAA0548     9    NCSGYCTCSHCLEQP---GCGWCTDpsntgKGKCIEGSYKGpVkmps 52   

                   ............f.ygeCprse.pendqwldwswssskCp<-*
                   + ++++  +++ ++  +C ++++++        ws+ +Cp   
    KIAA0548    53 qaptgnfypqplLnSSMCLEDSrYN--------WSFIHCP    84   

PF01437.15.fs: domain 1 of 1, from 9 to 84: score 43.6, E = 1.1e-13
                   *->nCsqytsCssCLaardpfyCgWCss.....egrCtrgsayt.s....
                      nCs+y +Cs+CL+ +   +CgWC ++++++ g+C+ gs +++ + ++
    KIAA0548     9    NCSGYCTCSHCLEQP---GCGWCTDpsntgKGKCIEGSYKGpVkmps 52   

                   ............f.ygeCprse.pendqwldwswssskCp<-*
                   + ++++  +++ ++  +C ++++++        ws+ +Cp   
    KIAA0548    53 qaptgnfypqplLnSSMCLEDSrYN--------WSFIHCP    84   

PF00053.14.fs: domain 1 of 2, from 86 to 129: score 27.1, E = 3.4e-07
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C+Cn+h+      C          +  C kC   +tG++C+ C  G+
    KIAA0548    86    CQCNGHS-----KCIN--------QSICEKCENLTTGKHCETCISGF 119  

                   yglpsgdpgqgC<-*
                   yg+p+ + g  C   
    KIAA0548   120 YGDPT-NGG-KC    129  

PF00053.14.ls: domain 1 of 2, from 86 to 129: score 28.8, E = 1.7e-05
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C+Cn+h+      C          +  C kC   +tG++C+ C  G+
    KIAA0548    86    CQCNGHS-----KCIN--------QSICEKCENLTTGKHCETCISGF 119  

                   yglpsgdpgqgC<-*
                   yg+p+ + g  C   
    KIAA0548   120 YGDPT-NGG-KC    129  

PF00053.14.ls: domain 2 of 2, from 132 to 178: score 8.8, E = 0.0027
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkp.nvtGrrCdrC..k
                      C Cn+h+    + C+        +tG C  C  ++v G+ C  C+ +
    KIAA0548   132    CKCNGHA----SLCNT-------NTGKCF-CTTkGVKGDECQLCevE 166  

                   pGyyglpsgdpgqgC<-*
                     y g+     ++ C   
    KIAA0548   167 NRYQGN---PLRGTC    178  

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