# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00769.fasta.huge -Q ../query/KIAA0548.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0548, 452 aa vs ./tmplib.23663 library 1987053 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.9077+/-0.00605; mu= 21.7072+/- 0.413 mean_var=121.6537+/-27.767, 0's: 0 Z-trim: 11 B-trim: 12 in 1/39 Lambda= 0.116282 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0534 ( 1028 res) hg03820s1 (1028) 2273 392.8 5.4e-110 KIAA0818 ( 375 res) hj00220 ( 375) 247 52.1 7.1e-08 KIAA1780 ( 1192 res) pf01012 (1192) 204 45.8 1.8e-05 KIAA0817 ( 2785 res) hg01392s2 (2785) 202 46.1 3.3e-05 KIAA0815 ( 1640 res) sh06087 (1640) 199 45.2 3.7e-05 KIAA1907 ( 1737 res) ah00504 (1737) 199 45.3 3.8e-05 KIAA1781 ( 974 res) fg06971(revised) ( 974) 193 43.8 5.8e-05 >>KIAA0534 ( 1028 res) hg03820s1 (1028 aa) initn: 2261 init1: 1943 opt: 2273 Z-score: 2066.6 bits: 392.8 E(): 5.4e-110 Smith-Waterman score: 2273; 68.000% identity (88.000% similar) in 450 aa overlap (3-452:585-1028) 10 20 30 KIAA05 TMSTCPPENCSGYCTCSHCLEQPGCGWCTDPS .:: :.:::: ::..::::::::::.::: KIAA05 CMWCSSTKRCVDSNAYIISFPYGQCLEWQTATCSPQNCSGLRTCGQCLEQPGCGWCNDPS 560 570 580 590 600 610 40 50 60 70 80 90 KIAA05 NTGKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCPACQCNGHS :::.:.::::: .::.:. : . . .:....: ... :.::::.:::::::::: KIAA05 NTGRGHCIEGSSRGPMKL-----IGMHHNEMVLDTNLCPKEKNYEWSFIQCPACQCNGHS 620 630 640 650 660 100 110 120 130 140 150 KIAA05 KCINQSICEKCENLTTGKHCETCISGFYGDPTNGGKCQPCKCNGHASLCNTNTGKCFCTT :::...::.:.::::::.:. :. :.::::::::.: : :.:::..:. .:::::::: KIAA05 TCINNNVCEQCKNLTTGKQCQDCMPGYYGDPTNGGQCTACTCSGHANICHLHTGKCFCTT 670 680 690 700 710 720 160 170 180 190 200 210 KIAA05 KGVKGDECQLCEVENRYQGNPLRGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQ ::.:::.::::. :::: ::::::::::.::::::::::: :::::..:::::.:.:... KIAA05 KGIKGDQCQLCDSENRYVGNPLRGTCYYSLLIDYQFTFSLLQEDDRHHTAINFIANPEQS 730 740 750 760 770 780 220 230 240 250 260 270 KIAA05 NRDLDMFINASKNFNLNITWAASFSAGTQAGEEMPVVSKTNIKEYKDSFSNEKFDFRNHP :..::. ::::.::::::::... .::: .::: .:::.:::::.:::: :::.::..: KIAA05 NKNLDISINASNNFNLNITWSVGSTAGTISGEETSIVSKNNIKEYRDSFSYEKFNFRSNP 790 800 810 820 830 840 280 290 300 310 320 330 KIAA05 NITFFVYVSNFTWPIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQSCWA ::::.::::::.::::::::::::...:::::::::::::::::::::::::::::.::: KIAA05 NITFYVYVSNFSWPIKIQIAFSQHNTIMDLVQFFVTFFSCFLSLLLVAAVVWKIKQTCWA 850 860 870 880 890 900 340 350 360 370 380 390 KIAA05 SRRREQLLREMQQMASRPFASVNVALETDEEPPDLIGGSIKTVPKPIALEPCFGNKAAVL :::::::::: :::::::::::.::::. : ... : .. .:::::.::: ::.:::: KIAA05 SRRREQLLRERQQMASRPFASVDVALEVGAEQTEFLRGPLEGAPKPIAIEPCAGNRAAVL 910 920 930 940 950 960 400 410 420 430 440 450 KIAA05 SVFVRLPRGLGGIPPPGQSGLAVASALVDISQQMPIVYKEKSGAVRNRKQQPPAQPGTCI .::. :::: .: :::::::::.::::.::::: :.:...:::::. : :::. KIAA05 TVFLCLPRGSSGAPPPGQSGLAIASALIDISQQKASDSKDKTSGVRNRKHLSTRQ-GTCV 970 980 990 1000 1010 1020 >>KIAA0818 ( 375 res) hj00220 (375 aa) initn: 277 init1: 129 opt: 247 Z-score: 233.3 bits: 52.1 E(): 7.1e-08 Smith-Waterman score: 247; 30.508% identity (57.627% similar) in 118 aa overlap (65-178:6-119) 40 50 60 70 80 90 KIAA05 GKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCPACQCNGHSK- :. : : :.. : :.:. :. KIAA08 PGYQGLHCETCKEGFYLNYTSGLCQPCDCSPHGAL 10 20 30 100 110 120 130 140 150 KIAA05 ---CINQSICEKCENLTTGKHCETCISGFYGDPTNGGKCQPCKCNGHASLCNTNTGKCFC : ... :. :. . :. :. : .:.:: :: : ::.::.... :.. :: :. KIAA08 SIPCNSSGKCQ-CKVGVIGSICDRCQDGYYGFSKNG--CLPCQCNNRSASCDALTGACLN 40 50 60 70 80 90 160 170 180 190 200 210 KIAA05 TTKGVKGDECQLCEVENRYQGNPLRGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPD .. ::..:. :. :. ::. : KIAA08 CQENSKGNHCEECK-EGFYQSPDATKECLRCPCSAVTSTGSCSIKSSELEPECDQCKDGY 100 110 120 130 140 150 >>KIAA1780 ( 1192 res) pf01012 (1192 aa) initn: 159 init1: 78 opt: 204 Z-score: 190.2 bits: 45.8 E(): 1.8e-05 Smith-Waterman score: 221; 25.962% identity (45.192% similar) in 208 aa overlap (5-178:277-480) 10 20 KIAA05 TMSTCPP----ENCSGYCTCSH---CLEQPG-C- ::: .: : :.. : . : : KIAA17 CQCQNGATCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGGVCHHVTGECS 250 260 270 280 290 300 30 40 50 60 70 KIAA05 ---GW----CTDPSNTGK-GKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYN :: : .: :. :: . .: ::. . .: .. : .. . KIAA17 CPSGWMGTVCGQPCPEGRFGKNCSQECQCHNGGTCDAATGQCHCSPGYTGERCQDECPVG 310 320 330 340 350 360 80 90 100 110 120 130 KIAA05 WSFIHCP-ACQCNGHSKCINQSICEKCENLTTGKHCET--CISGFYGDPTNGGKCQPCKC . : .::: . .:: . : :: .:..::. : :.:: . .: ::. KIAA17 TYGVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDK-RC-PCHL 370 380 390 400 410 420 140 150 160 170 180 KIAA05 -NGHASLCNTNTGKCFCT------------TKGVKGDECQ-LCEVENRYQGNPLRGTCYY : :. :. .:.: : . : :. :: .: .: . . . : : KIAA17 ENTHS--CHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKCTC 430 440 450 460 470 480 190 200 210 220 230 240 KIAA05 TLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWAASFSAGT KIAA17 APGFKGIDCSTPCPLGTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGT 490 500 510 520 530 540 >>KIAA0817 ( 2785 res) hg01392s2 (2785 aa) initn: 553 init1: 196 opt: 202 Z-score: 185.4 bits: 46.1 E(): 3.3e-05 Smith-Waterman score: 313; 31.638% identity (55.367% similar) in 177 aa overlap (12-179:1050-1200) 10 20 30 40 KIAA05 TMSTCPPENCSGYCTCSH-CLEQPGCGWCTDPSNTGKGKCI : :.. :::. : : :. : . :. KIAA08 LGLARCHPRATCLNTPLSYECHCQRGYQGDGISHCNRTCLEDCGHGVCSGPPDF---TCV 1020 1030 1040 1050 1060 1070 50 60 70 80 90 KIAA05 -EGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCPACQCNGHSKCINQS- . .. . . :. :: : : : : .: : :. ::.: ... KIAA08 CDLGWTSDLPPPTPAP-GP--PAP-----RCSRD------------CGCSFHSHCRKRGP 1080 1090 1100 1110 100 110 120 130 140 150 KIAA05 -ICEKCENLTTGKHCETCISGFYGDPTNGGKCQPCKCNGHAS----LCNTNTGKCFCTTK .:..:.. : :.::: : : .:. :.. :.::.::::.. :.. .: ::: . KIAA08 GFCDECQDWTWGEHCERCRPGSFGNATGSRGCRPCQCNGHGDPRRGHCDNLSGLCFCQDH 1120 1130 1140 1150 1160 1170 160 170 180 190 200 210 KIAA05 GVKGDECQLCEVENRYQGNPLRG-TCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQ ..: .:::: : :.: : .:. KIAA08 -TEGAHCQLC--SPGYYGDPRAGGSCFRECGGRALLTNVSSVALGSRRVGGLLPPGGGAA 1180 1190 1200 1210 1220 1230 >>KIAA0815 ( 1640 res) sh06087 (1640 aa) initn: 145 init1: 56 opt: 199 Z-score: 184.5 bits: 45.2 E(): 3.7e-05 Smith-Waterman score: 210; 26.633% identity (45.729% similar) in 199 aa overlap (4-178:1323-1511) 10 20 KIAA05 TMSTCPP----ENCSGYCTCSH---CLEQPGCG ::: ::. : :.. : .: : KIAA08 LCGCLNGGSCDAATGACRCPTGFLGTDCNLTCPQGRFGPNCTHVCGCGQGAAC--DPVTG 1300 1310 1320 1330 1340 1350 30 40 50 60 70 80 KIAA05 WCTDPSNTGKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCP-A : : . . .: .: .. . . : . : ..: . .:. :: : KIAA08 TCLCPPGRAGVRCERGCPQNRFGVGCEH-TCSCRNGGLCHASNGSCSCGLGWTGRHCELA 1360 1370 1380 1390 1400 90 100 110 120 130 KIAA05 CQ-------CNGHSKCINQSICE------KCENLTTGKHCE-TCISGFYGDPTNGGKCQP : :. . .: :.: :: .: :. :: : ::.: . :: KIAA08 CPPGRYGAACHLECSCHNNSTCEPATGTCRCGPGFYGQACEHPCPPGFHG-----AGCQG 1410 1420 1430 1440 1450 1460 140 150 160 170 180 KIAA05 -CKCNGHASLCNTNTGKCFCTTKGVKGDECQL-CEVENRYQGNPLRGTCYYTLLIDYQFT : :. :.. :. .:.:.: . : .: :. :: . .: : : KIAA08 LCWCQ-HGAPCDPISGRCLCPA-GFHGHFCERGCEPGSFGEGCHQRCDCDGGAPCDPVTG 1470 1480 1490 1500 1510 1520 190 200 210 220 230 240 KIAA05 FSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWAASFSAGTQAGEEMPVV KIAA08 LCLCPPGRSGATCNLDCRRGQFGPSCTLHCDCGGGADCDPVSGQCHCVDGYMGPTCREGG 1530 1540 1550 1560 1570 1580 >>KIAA1907 ( 1737 res) ah00504 (1737 aa) initn: 193 init1: 93 opt: 199 Z-score: 184.3 bits: 45.3 E(): 3.8e-05 Smith-Waterman score: 245; 27.473% identity (49.451% similar) in 182 aa overlap (1-163:1249-1413) 10 20 30 KIAA05 TMSTCPPENCSGYCTCSHCLEQPGCGWCTD : :: : .: : : . :. :. KIAA19 SSLFCRNAAASLSLFYNNGARPCGCHEVGATGPTCEP--FGGQCPCHAHVIGRDCSRCAT 1220 1230 1240 1250 1260 1270 40 50 60 70 80 KIAA05 ---------PSNTGKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFI : . : : : . . . : : :. :: : .. .. KIAA19 GYWGFPNCRPCDCGARLCDELTGQC-ICPPRTIP-----PDCLL----CQPQTFGCHPLV 1280 1290 1300 1310 1320 90 100 110 120 130 KIAA05 HCPACQCNGHS-KCINQSICE------KCENLTTGKHCETCISGFYGDPTNGGKCQPCKC : :.:.: . . ... :. ::. .::..:.:: ::.: : .:.:: : KIAA19 GCEECNCSGPGIQELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGFHGYP----RCRPCDC 1330 1340 1350 1360 1370 1380 140 150 160 170 180 190 KIAA05 N--GHA-SLCNTNTGKCFCTTKGVKGDECQLCEVENRYQGNPLRGTCYYTLLIDYQFTFS . : : ..:. ::.:.: ..:.: .:. : KIAA19 HEAGTAPGVCDPLTGQCYCK-ENVQGPKCDQCSLGTFSLDAANPKGCTRCFCFGATERCR 1390 1400 1410 1420 1430 1440 200 210 220 230 240 250 KIAA05 LSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWAASFSAGTQAGEEMPVVSK KIAA19 SSSYTRQEFVDMEGWVLLSTDRQVVPHERQPGTEMLRADLRHVPEAVPEAFPELYWQAPP 1450 1460 1470 1480 1490 1500 >>KIAA1781 ( 974 res) fg06971(revised) (974 aa) initn: 182 init1: 84 opt: 193 Z-score: 180.9 bits: 43.8 E(): 5.8e-05 Smith-Waterman score: 231; 26.291% identity (44.601% similar) in 213 aa overlap (5-178:192-395) 10 20 KIAA05 TMSTCPP----ENCSGYCTCSH---CLEQPG-C- ::: .::: : : : : . : : KIAA17 CPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCH 170 180 190 200 210 220 30 40 50 60 70 KIAA05 ---GW----CTDPSNTG--------KGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMC :. : . : . : .:. .:. . : : : . .: KIAA17 CTAGYMGDRCQEECPFGSFGFQCSQRCDCHNGGQCSPTTGACECEPG--YKGPRCQERLC 230 240 250 260 270 80 90 100 110 120 KIAA05 LEDSRYNWSFIHCPACQCNGHSKCINQSICEKCENLTTGKHC-ETCISGFYGDPTNGGKC : . . :: :. .. .: . :. .:.:: :.: :.::: : KIAA17 PEGLHGPGCTLPCP-CDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDG-----C 280 290 300 310 320 330 130 140 150 160 170 KIAA05 Q-PCKCNGHASLCNTNTGKCFCT------------TKGVKGDECQ-LCEVENRYQGNPLR : :: :.. :. :.. :: : :. . :. : .:. .: .: .:. KIAA17 QLPCTCQNGAD-CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVD 340 350 360 370 380 390 180 190 200 210 220 230 KIAA05 GTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWAAS :.: KIAA17 GSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELP 400 410 420 430 440 450 452 residues in 1 query sequences 1987053 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:33 2008 done: Thu Dec 18 15:06:33 2008 Total Scan time: 0.410 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]