hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06040842/chunk_1/iprscan-20080502-06040842.nocrc
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Query sequence: KIAA0545
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02145.6.fs Rap/ran-GAP                                    414.1   3.6e-125   1
PF02145.6.ls Rap/ran-GAP                                    416.0   4.8e-122   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          24.9    2.5e-06   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          26.8    7.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02145.6.fs   1/1     227   415 ..     1   192 []   414.1 3.6e-125
PF02145.6.ls   1/1     227   415 ..     1   192 []   416.0 4.8e-122
PF00595.14.fs   1/1     553   625 ..     1    86 []    24.9  2.5e-06
PF00595.14.ls   1/1     553   625 ..     1    86 []    26.8  7.2e-05

Alignments of top-scoring domains:
PF02145.6.fs: domain 1 of 1, from 227 to 415: score 414.1, E = 3.6e-125
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Neea+paF+eFL l G++v LK+f +   Y ++LDvk+d+TGth
    KIAA0545   227    MYNNEEAGPAFEEFLSLIGEKVCLKGFTK---YAAQLDVKTDSTGTH 270  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yt y+d+eimFHVSTlLPyt++++qqL+rKRHIGNDiVtI+Fqe+G++
    KIAA0545   271 SLYTMYQDYEIMFHVSTLLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGAL 320  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF p++IrShFqhVf+iVr+++p+t++v+Y+ +vtr+kD p fgp++p g
    KIAA0545   321 PFTPKNIRSHFQHVFIIVRVHNPCTDNVCYSMAVTRSKDAPPFGPPIPSG 370  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                    +f+k+ +Fr+flLak+iNaena+hk+ kF+++atrtRq++L+dL   
    KIAA0545   371 TTFRKSDVFRDFLLAKVINAENAAHKSDKFHTMATRTRQEYLKDL    415  

PF02145.6.ls: domain 1 of 1, from 227 to 415: score 416.0, E = 4.8e-122
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Neea+paF+eFL l G++v LK+f +   Y ++LDvk+d+TGth
    KIAA0545   227    MYNNEEAGPAFEEFLSLIGEKVCLKGFTK---YAAQLDVKTDSTGTH 270  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yt y+d+eimFHVSTlLPyt++++qqL+rKRHIGNDiVtI+Fqe+G++
    KIAA0545   271 SLYTMYQDYEIMFHVSTLLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGAL 320  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF p++IrShFqhVf+iVr+++p+t++v+Y+ +vtr+kD p fgp++p g
    KIAA0545   321 PFTPKNIRSHFQHVFIIVRVHNPCTDNVCYSMAVTRSKDAPPFGPPIPSG 370  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                    +f+k+ +Fr+flLak+iNaena+hk+ kF+++atrtRq++L+dL   
    KIAA0545   371 TTFRKSDVFRDFLLAKVINAENAAHKSDKFHTMATRTRQEYLKDL    415  

PF00595.14.fs: domain 1 of 1, from 553 to 625: score 24.9, E = 2.5e-06
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      ++tl ++ + g lGf +k          + v+ev    g A ++G L
    KIAA0545   553    DMTLRRN-GLGQLGFHVK--------YDGTVAEVEDY-GFAWQAG-L 588  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + G ++++++ + ++ l+h++ +++l+ s+  +v+++++   
    KIAA0545   589 RQGSRLVEICKVAVVTLTHDQMIDLLRTSV--TVKVVII    625  

PF00595.14.ls: domain 1 of 1, from 553 to 625: score 26.8, E = 7.2e-05
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      ++tl ++ + g lGf +k          + v+ev    g A ++G L
    KIAA0545   553    DMTLRRN-GLGQLGFHVK--------YDGTVAEVEDY-GFAWQAG-L 588  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + G ++++++ + ++ l+h++ +++l+ s+  +v+++++   
    KIAA0545   589 RQGSRLVEICKVAVVTLTHDQMIDLLRTSV--TVKVVII    625  

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