hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06023019/chunk_1/iprscan-20080502-06023019.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0544 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00184 29.1 0.0006 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00184 1/1 309 347 .. 1 23 [] 29.1 0.0006 Alignments of top-scoring domains: SM00184: domain 1 of 1, from 309 to 347: score 29.1, E = 0.0006 *->CpICle....pvvlpCgH..FCr.Ci.........CPlC<-* C +Cl++ +++ +lpC H C +C ++ + + ++CP+C KIAA0544 309 CVVCLSdlrdTLILPCRHlcLCTsCAdtlryqannCPIC 347 //