hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06023019/chunk_1/iprscan-20080502-06023019.nocrc
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Query sequence: KIAA0544
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           19.0    2.4e-06   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           20.8      0.001   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     309   347 ..     1    50 []    19.0  2.4e-06
PF00097.15.ls   1/1     309   347 ..     1    50 []    20.8    0.001

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 309 to 347: score 19.0, E = 2.4e-06
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +Cl  l +       ilpC+H     + C sC  +       ++C
    KIAA0544   309    CVVCLSDLRDTL-----ILPCRHL----CLCTSCADTLRY--QANNC 344  

                   plC<-*
                   p+C   
    KIAA0544   345 PIC    347  

PF00097.15.ls: domain 1 of 1, from 309 to 347: score 20.8, E = 0.001
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +Cl  l +       ilpC+H     + C sC  +       ++C
    KIAA0544   309    CVVCLSDLRDTL-----ILPCRHL----CLCTSCADTLRY--QANNC 344  

                   plC<-*
                   p+C   
    KIAA0544   345 PIC    347  

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