# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg04431.fasta.huge -Q ../query/KIAA0544.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0544, 583 aa
 vs ./tmplib.23663 library

1986922 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.4172+/-0.00739; mu= 10.3637+/- 0.504
 mean_var=193.7430+/-47.762, 0's: 0 Z-trim: 5  B-trim: 89 in 1/39
 Lambda= 0.092143

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1917  ( 702 res)   fk00028                     ( 702) 1758 246.2 6.4e-66


>>KIAA1917  ( 702 res)   fk00028                          (702 aa)
 initn: 1829 init1: 1003 opt: 1758  Z-score: 1275.3  bits: 246.2 E(): 6.4e-66
Smith-Waterman score: 1874;  57.169% identity (75.551% similar) in 544 aa overlap (27-557:19-531)

               10        20        30        40        50        60
KIAA05 RPGPGHVRVRTPPLSPLPFRPWPLCPAARRTMGSILSRRIAGVEDIDIQANSAYRYPPKS
                                 ::  .::.. ::. ::::..:: .::.:::::::
KIAA19         AAAVKRGGRRGHRGRAGAAAAAAMGALTSRQHAGVEEVDIPSNSVYRYPPKS
                       10        20        30        40        50  

               70        80        90       100       110       120
KIAA05 GNYFASHFFMGGEKFDTPHPEGYLFGENMDLNFLGSRPVQFPYVTPAPHEPVKTLRSLVN
       :.::::::.:::::::. :::::::::: ::::::.::: :::..: :.:::::::::::
KIAA19 GSYFASHFIMGGEKFDSTHPEGYLFGENSDLNFLGNRPVVFPYAAPPPQEPVKTLRSLVN
             60        70        80        90       100       110  

              130       140       150       160       170       180
KIAA05 IRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRAVY
       ::::.::::.  ... :: :...: .: :..:::::.::::::::: ::.::: :: : :
KIAA19 IRKDTLRLVKCAEEVKSPGEEASKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIASY
            120       130       140       150       160       170  

              190       200       210       220       230       240
KIAA05 SPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGD
        ::. :::::::.::::: ::: :::  .: ::: ..::.::::: :.:.:..:::::::
KIAA19 IPKDNSLQSETVQYKRGVCQQFCLPSHTVDPSEWAEEELGFDLDREVYPLVVHAVVDEGD
            180       190       200       210       220       230  

              250       260       270       280       290          
KIAA05 VVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENK-NNQETKPSD
         :  :: ::::..:::: ::.: ::::::::.:: :::::::::::::: :.:..: ..
KIAA19 --EYFGHCHVLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAE
              240       250       260       270       280       290

     300       310       320       330       340       350         
KIAA05 DENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRA
       :: :::: ::::::::.::::::::::::::..:::::::::::::::::::::::::::
KIAA19 DEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIRA
              300       310       320       330       340       350

     360       370       380       390       400       410         
KIAA05 VRKKPGALSPVSFSPVLAQSLEHDEHSCPFKKSKPHPASLASKKPKRETNSDSVPPGYEP
       .::: : :::.::.:..         :   . :. ::.:            ...::::: 
KIAA19 MRKKLGPLSPTSFNPII---------SSQTSDSEEHPSS------------ENIPPGYEV
              360                370       380                     

     420       430       440       450            460       470    
KIAA05 ISLLEALNGLRAVSPAIPSAPLYEEITYSGI-----SDGLSQASCPLAAIDHILDSSRQK
       .::::::::  . :::.:   .  .   ::.     :::       .. .:.. ::: : 
KIAA19 VSLLEALNGPLTPSPAVPPLHVLGDGHLSGMLPSYGSDGHLPPVRTISPLDRLSDSSSQ-
     390       400       410       420       430       440         

          480       490        500          510       520       530
KIAA05 GRPQSKAPDSTLRSPSSPIHEE-DEEKLSED---VDAPPPLGGAELALRESSSPESFITE
       :   .:. ...  . :: .::: ::.. ::.   ..  : .   .:. . . .:::   :
KIAA19 GLKLKKSLSKSTSQNSSVLHEEEDEHSCSESETQLSQRPSV--QHLGEECGVTPES---E
      450       460       470       480         490       500      

                 540       550       560       570       580       
KIAA05 EVDESSS---PQQGTRAASIENVLQDSSPEHCGRGPPADIYLPALGPDSCSVGIDE    
       ..  :::    :..  .. . ...  ::::                              
KIAA19 NLTLSSSGAIDQSSCTGTPLSSTI--SSPEGPASSSLAQSVMSMASSQISTDTVSSMSGS
           510       520         530       540       550       560 




583 residues in 1 query   sequences
1986922 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:23 2008 done: Thu Dec 18 15:06:24 2008
 Total Scan time:  0.490 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]