hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06004313/chunk_1/iprscan-20080502-06004313.nocrc
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Query sequence: KIAA0543
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00597                                                 269.2    3.2e-76   2
SM00349                                                 124.3    1.4e-32   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00597     1/2      77   160 ..     1   117 []   136.9  2.2e-36
SM00349     1/1     275   335 ..     1    62 []   124.3  1.4e-32
SM00597     2/2     403   486 ..     1   117 []   132.3  5.3e-35

Alignments of top-scoring domains:
SM00597: domain 1 of 2, from 77 to 160: score 136.9, E = 2.2e-36
                   *->kpRrfqksWfkqfpdWLeYsvekDaKIaFClyCylFrpikgegggsd
                      kpR++qksWf+qfp WL++++e++a  +FC++C++++   +++++++
    KIAA0543    77    KPRSIQKSWFVQFP-WLIMNEEQTA--LFCSACREYP---SIRDKRS 117  

                   afvseGfsGsWkkekdrrkttLkqHeVVREKgsdvskrHnnAeeKYNLFV
                   +++ eG++G++k+e+      Lk+H+        +sk+H+          
    KIAA0543   118 RLI-EGYTGPFKVET------LKYHA--------KSKAHM---------- 142  

                   KKlCvdlmeqrqsilrahek<-*
                     +Cv+++++r++i++a+++   
    KIAA0543   143 --FCVNALAARDPIWAARFR    160  

SM00349: domain 1 of 1, from 275 to 335: score 124.3, E = 1.4e-32
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V FeDVAV+F++EEW+ LD  Q++LYRdVM+ NY+ L+SLG ++ +k
    KIAA0543   275    VVFEDVAVYFTREEWGMLDKRQKELYRDVMRMNYELLASLG-PAAAK 320  

                   pdliskLEqgeEpwi<-*
                   pdliskLE++  pwi   
    KIAA0543   321 PDLISKLERRAAPWI    335  

SM00597: domain 2 of 2, from 403 to 486: score 132.3, E = 5.3e-35
                   *->kpRrfqksWfkqfpdWLeYsvekDaKIaFClyCylFrpikgegggsd
                      +pR++q+sWf+qfp WL++++++++  +FC++C++++   + +++s+
    KIAA0543   403    RPRSIQRSWFGQFP-WLVIDPKETK--LFCSACIERP---NLHDKSS 443  

                   afvseGfsGsWkkekdrrkttLkqHeVVREKgsdvskrHnnAeeKYNLFV
                   ++v +G++G++k+e+      Lk+He        vsk+H+          
    KIAA0543   444 RLV-RGYTGPFKVET------LKYHE--------VSKAHR---------- 468  

                   KKlCvdlmeqrqsilrahek<-*
                     lCv+++e+++++++++++   
    KIAA0543   469 --LCVNTVEIKEDTPHTALV    486  

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