# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg04390.fasta.huge -Q ../query/KIAA0543.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0543, 1111 aa vs ./tmplib.23663 library 1986394 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.0648+/-0.00547; mu= 23.7708+/- 0.375 mean_var=101.3170+/-22.710, 0's: 0 Z-trim: 27 B-trim: 0 in 0/40 Lambda= 0.127419 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1586 ( 739 res) fj08085 ( 739) 385 81.9 3.6e-16 KIAA1285 ( 785 res) hh11563(revised) ( 785) 256 58.3 5.1e-09 KIAA1852 ( 948 res) fj01514 ( 948) 237 54.9 6.3e-08 KIAA1806 ( 481 res) fk00438 ( 481) 226 52.4 1.8e-07 KIAA1588 ( 613 res) fj08823 ( 613) 224 52.2 2.6e-07 KIAA0412 ( 720 res) hg03242 ( 720) 220 51.6 4.8e-07 KIAA1513 ( 649 res) fh00168(revised) ( 649) 212 50.1 1.3e-06 KIAA1559 ( 544 res) fh19195 ( 544) 206 48.8 2.5e-06 KIAA0798 ( 682 res) hk06584 ( 682) 206 49.0 2.8e-06 KIAA1473 ( 574 res) fj03262 ( 574) 205 48.7 2.9e-06 KIAA1431 ( 891 res) fj00022 ( 891) 206 49.2 3.2e-06 KIAA0065 ( 848 res) ha00946 ( 848) 201 48.2 5.9e-06 KIAA0961 ( 530 res) hj05830 ( 530) 196 47.0 8.7e-06 KIAA2007 ( 580 res) fj01689 ( 580) 194 46.7 1.2e-05 KIAA0972 ( 702 res) hj06859 ( 702) 194 46.8 1.3e-05 KIAA1862 ( 1070 res) aj00563 (1070) 183 45.1 6.5e-05 KIAA1969 ( 595 res) fk06944 ( 595) 179 43.9 8e-05 KIAA1611 ( 813 res) fj12627 ( 813) 174 43.2 0.00018 KIAA2003 ( 460 res) ah02593 ( 460) 170 42.1 0.00022 KIAA1710 ( 515 res) fj18457 ( 515) 166 41.4 0.00039 KIAA1198 ( 553 res) fg01911 ( 553) 165 41.3 0.00046 KIAA1353 ( 640 res) fj01443 ( 640) 163 41.0 0.00064 KIAA1956 ( 680 res) fk08713 ( 680) 151 38.9 0.0031 KIAA1962 ( 746 res) hm00158 ( 746) 149 38.6 0.0041 KIAA2033 ( 766 res) ej00602s1 ( 766) 149 38.6 0.0042 >>KIAA1586 ( 739 res) fj08085 (739 aa) initn: 206 init1: 113 opt: 385 Z-score: 382.2 bits: 81.9 E(): 3.6e-16 Smith-Waterman score: 490; 22.446% identity (56.502% similar) in 646 aa overlap (414-1029:100-707) 390 400 410 420 430 440 KIAA05 CSSSICEEGDGPRRIKRTYRPRSIQRSWFGQFPWLVIDPKETKLFCSACIERPNLHDKSS :. :: : :: :: :. : .: .:. KIAA15 EKPSLSSKKEIDNLVLPDCWNEKQAFMFTEQYKWLEI--KEGKLGCKDCSAVRHLGSKAE 70 80 90 100 110 120 450 460 470 480 KIAA05 RLVR------GY----TGPFKV-------ETLKYHEVSKAHRLCVNTVEIKEDTPHTALV . :. .: .: :. . .. :.::::: . .. . . :: KIAA15 KHVHVSKEWIAYLVTPNGSNKTTRQASLRKKIREHDVSKAHGKIQDLLKESTNDSICNLV 130 140 150 160 170 180 490 500 510 520 530 540 KIAA05 PEISSDLMANMEHFFNAAYSIAYHSRPLNDFEKILQLLQSTGTVILGKYRNRTACTQFIK . .. . . ::..::.. :.:::.:.: .: ...: : . .: . :.. . KIAA15 HKQNNKNIDATVKVFNTVYSLVKHNRPLSDIEGARELQEKNGEV--NCLNTRYSATRIAE 190 200 210 220 230 240 550 560 570 580 590 600 KIAA05 YISETLKREILEDV-RNSPCVSVLLDSSTDASEQACVGIYIRYFKQMEVKES--YITLAP .:.. .: .:.... ... . ...: .. .:... . ::.. : ...: KIAA15 HIAKEMKMKIFKNIIEENAKICIIIDEASTVSKKTTLVIYLQCTIQSAPAPVMLFVALKE 250 260 270 280 290 300 610 620 630 640 650 660 KIAA05 LYSETADGYFETIVSALDELDIP--FRKPGWVVGLGTDGS-AMLSCRGGLVEKFQEVIPQ : : :. .:....:.. . . : . .... .::. ..:. ..:.. :. : .:. KIAA15 LVSTIAECIVNTLLTTLNDCGFTNEYLKAN-LIAFCSDGANTILGRKSGVATKLLENFPE 310 320 330 340 350 360 670 680 690 700 710 KIAA05 LLPVHCVAHRLHLAVVDACGSIDLVKKCDRHIRTVFKFYQSSNKRLNELQEGAAP-LEQE .. .:. :::.:.. :. . : ... : ....:.. :: ..: .: :: : KIAA15 IIIWNCLNHRLQLSLDDSISEIKQINHLKIFIDKIYSIYHQPNKNQTKLLGTVAKELETE 370 380 390 400 410 420 720 730 740 750 760 770 KIAA05 IIRLKDLNAVRWVASRRRTLHALLVSWPALARHLQRVAEAGGQIGHRAKGMLKLMRGFHF ::.. . . ::.: .. :. ..: : :.. : .:. : . ...: KIAA15 IIKIGRVMGPRWAACSLQAATAVWHAYPILYMHFS----------HSYSGLAKRLANINF 430 440 450 460 470 780 790 800 810 820 830 KIAA05 VKFCHFLLDFLSIYRPLSEVCQKEIVLITEVNATLGRAYVALESLRHQAGPKEEEFNASF .. ...:.: . :: . :.. . : ... . :. :::.:. .: : ... . KIAA15 LQDLALMIDILEEFSVLSTALQSRSTNIKKAQKLIKRTIRALENLKIGTGKYESQIEDLI 480 490 500 510 520 530 840 850 860 870 880 890 KIAA05 KDGRLHGICLDKLEVAEQRFQADRERTVLTG--IEYLQQRFDADRPPQ--LKNMEVFDTM :. ... : ..: ...:.: :..: :.... :. .:: . .. ..... KIAA15 KSDKFKDIPFNK----NNKFNA-LPRSILLDNIIQHMNLRLLSDRNHEDIFNYFDLLEPS 540 550 560 570 580 900 910 920 930 940 950 KIAA05 AWPSGIELASFGNDDILNLARYFECSLPTGYSEEALLEEWLGLKTIAQHLPFSMLCKNAL .:: : : . : .:..:.. :: .. : . .: . KIAA15 TWP------------------YEEITSPWIAGEKTLFHLCKILKYEVDLNDFREFVNNNI 590 600 610 620 630 960 970 980 990 1000 1010 KIAA05 -AQHCRFPL-LSKLMAVVVCVPISTSCCERGFKAMNRIRTDERTKLSNEVLNMLMMTAVN ... .: . : .: . :... ::::. :: : : :..:. . .. :: . KIAA15 KSNNVSIPTTIYKAKKIVSTIAINSAEAERGFNLMNIICTRVRNSLTIDHVSDLMTINLL 640 650 660 670 680 690 1020 1030 1040 1050 1060 1070 KIAA05 GVAVTEYDPQPAIQHWYLTSSGRRFSHVYTCAQVPARSPASARLRKEEMGALYVEEPRTQ : ....: : .. : KIAA15 GKELADWDATPFVKSWSNCNHRLATDTRVRQKSTKVFHENQLAIWNLK 700 710 720 730 >>KIAA1285 ( 785 res) hh11563(revised) (785 aa) initn: 270 init1: 244 opt: 256 Z-score: 253.8 bits: 58.3 E(): 5.1e-09 Smith-Waterman score: 256; 36.029% identity (66.176% similar) in 136 aa overlap (261-393:300-430) 240 250 260 270 280 290 KIAA05 EITDGIHSSSDINILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEWG : . ::: : ::.:.::::.:...::: KIAA12 LQEYGLLQRRLENMENLLKNRNFWILRLPPGSNGEVPKV----PVTFDDVAVHFSEQEWG 270 280 290 300 310 320 300 310 320 330 340 KIAA05 MLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKG--RP :.. :::::..::: ::: :.:. : .::::.:..:: : ... . . :. : KIAA12 NLSEWQKELYKNVMRGNYESLVSMDYAISKPDLMSQMERGERPTMQEQEDSEEGETPTDP 330 340 350 360 370 380 350 360 370 380 390 400 KIAA05 PGNKKMVAVR-EADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSI . . .... :..:. ...: : :. ... . . : :: KIAA12 SAAHDGIVIKIEVQTNDEGSESLETP-EPLMGQVEEHGFQDSELGDPCGEQPDLDMQEPE 390 400 410 420 430 440 410 420 430 440 450 460 KIAA05 QRSWFGQFPWLVIDPKETKLFCSACIERPNLHDKSSRLVRGYTGPFKVETLKYHEVSKAH KIAA12 NTLEESTEGSSEFSELKQMLVQQRNCTEGIVIKTEEQDEEEEEEEEDELPQHLQSLGQLS 450 460 470 480 490 500 >>KIAA1852 ( 948 res) fj01514 (948 aa) initn: 225 init1: 225 opt: 237 Z-score: 234.2 bits: 54.9 E(): 6.3e-08 Smith-Waterman score: 238; 33.523% identity (55.114% similar) in 176 aa overlap (181-342:111-285) 160 170 180 190 200 KIAA05 RDPIWAARFRSIRDPPGDVLASPEPLFTADCP--IFYPPGPLGGFDSM-AELLPSSRAEL :: : : :.. : .. : : ::. KIAA18 VPERSQPRPGRARRRGPGTCHGGAAARRRKCPPGTTAPSRPRGALRSTPGKQPPLSAAEV 90 100 110 120 130 140 210 220 230 240 250 260 KIAA05 EDPGGDGAIPAMYLDCISDLRQKEITDGIHSSSDINILYNDAVES---CIQDPS--AEGL : .:.. . .. . . . : .... .. : : : : :. .:: KIAA18 GICCVPGQVPGQSVLGMAAI-NPWASWGALTDQSWGMTAVDPWASWALCPQYPAWHVEGS 150 160 170 180 190 270 280 290 300 310 KIAA05 SEE------VPVVFEELPVVFEDVAVYFTREEWGMLDKRQKELYRDVMRMNYELLASLGP :: .:.. . ::.:.:::: ::.::::.:: :. :::::: .: : :.: KIAA18 LEEGRRATGLPAAQVQEPVTFKDVAVDFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVGN 200 210 220 230 240 250 320 330 340 350 360 370 KIAA05 AAAKPDLISKLERRAAPWIKDPNGPKWGKGRPPGNKKMVAVREADTQASAADSALLPGSP :::..:: ::. :: . :. KIAA18 QIAKPEVISLLEQGEEPWSVEQACPQRTCPEWVRNLESKALIPAQSIFEEEQSHGMKLER 260 270 280 290 300 310 >>KIAA1806 ( 481 res) fk00438 (481 aa) initn: 270 init1: 213 opt: 226 Z-score: 226.0 bits: 52.4 E(): 1.8e-07 Smith-Waterman score: 226; 46.154% identity (69.231% similar) in 78 aa overlap (260-337:4-81) 230 240 250 260 270 280 KIAA05 KEITDGIHSSSDINILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEW :... .:.. . ::.: :::: :: ::: KIAA18 VEEEAMAPGLPTACSQEPVTFADVAVVFTPEEW 10 20 30 290 300 310 320 330 340 KIAA05 GMLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKGRPP .::. :. :::::: ::. :::.. ::. .: ::.:. : : KIAA18 VFLDSTQRSLYRDVMLENYRNLASVADQLCKPNALSYLEERGEQWTTDRGVLSDTCAEPQ 40 50 60 70 80 90 350 360 370 380 390 400 KIAA05 GNKKMVAVREADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQR KIAA18 CQPQEAIPSQDTFTEILSIDVKGEQPQPGEKLYKYNELEKPFNSIEPLFQYQRIHAGEAS 100 110 120 130 140 150 >>KIAA1588 ( 613 res) fj08823 (613 aa) initn: 222 init1: 222 opt: 224 Z-score: 223.0 bits: 52.2 E(): 2.6e-07 Smith-Waterman score: 228; 36.842% identity (61.654% similar) in 133 aa overlap (211-333:3-133) 190 200 210 220 230 240 KIAA05 CPIFYPPGPLGGFDSMAELLPSSRAELEDPGGDGAIPAMYLDCISDLRQKEITDGIHSSS : ::. :: : ::. .. . .:. KIAA15 LSGCPGAL-LRQTDCHS-LRMAALSPTFATST 10 20 30 250 260 270 280 290 KIAA05 DINILYNDAV-------ESCIQDPS---AEGLSEEVPVVFEELPVVFEDVAVYFTREEWG . . .:. .:: :. . :: ..: : . :.:.:::: ::..:: KIAA15 QDSTCLQDSEFPVSSKDHSCPQNLDLFVCSGLEPHTPSVGSQESVTFQDVAVDFTEKEWP 40 50 60 70 80 90 300 310 320 330 340 350 KIAA05 MLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKGRPPG .::. :..::.::: :: :.::: ..::.:::.::.. : KIAA15 LLDSSQRKLYKDVMLENYSNLTSLGYQVGKPSLISHLEQEEEPRTEERGAHQGACADWET 100 110 120 130 140 150 360 370 380 390 400 410 KIAA05 NKKMVAVREADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQRS KIAA15 PSKTKWSLLMEDIFGKETPSGVTMERAGLGEKSTEYAHLFEVFGMDPHLTQPMGRHAGKR 160 170 180 190 200 210 >>KIAA0412 ( 720 res) hg03242 (720 aa) initn: 201 init1: 201 opt: 220 Z-score: 218.4 bits: 51.6 E(): 4.8e-07 Smith-Waterman score: 220; 31.333% identity (59.333% similar) in 150 aa overlap (257-404:89-235) 230 240 250 260 270 280 KIAA05 LRQKEITDGIHSSSDINILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTR :... .. : . .. :.:.:::: ::. KIAA04 RAWKPRATGQGRAQVGSVRPPGAPLSQLCGPGGDVMAAAVLTDRAQVSVTFDDVAVTFTK 60 70 80 90 100 110 290 300 310 320 330 340 KIAA05 EEWGMLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKG ::::.:: :. ::..:: : ::.::: . : .:: .::. :: . . .. KIAA04 EEWGQLDLAQRTLYQEVMLENCGLLVSLGCPVPKAELICHLEHGQEPWTRKED---LSQD 120 130 140 150 160 170 350 360 370 380 390 400 KIAA05 RPPGNKKMVAVREADTQASAADSAL-LPGSPVEARASCCSSSICEEGDGPRRIKRT-YRP ::.: . : : : . .. : :. ... . . . :. :: .... .:: KIAA04 TCPGDKGKPKTTEPTTCEPALSEGISLQGQVTQGNSVDSQLGQAEDQDGLSEMQEGHFRP 180 190 200 210 220 230 410 420 430 440 450 460 KIAA05 RSIQRSWFGQFPWLVIDPKETKLFCSACIERPNLHDKSSRLVRGYTGPFKVETLKYHEVS KIAA04 GIDPQEKSPGKMSPECDGLGTADGVCSRIGQEQVSPGDRVRSHNSCESGKDPMIQEEENN 240 250 260 270 280 290 >>KIAA1513 ( 649 res) fh00168(revised) (649 aa) initn: 210 init1: 210 opt: 212 Z-score: 210.9 bits: 50.1 E(): 1.3e-06 Smith-Waterman score: 212; 35.294% identity (63.725% similar) in 102 aa overlap (273-373:85-182) 250 260 270 280 290 300 KIAA05 NILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEWGMLDKRQKELYRD .:..:..::.::. ::: .: ..:: :::. KIAA15 EEEEEEIQSRELEDGPADMQKVRICSEGGWVPALFDEVAIYFSDEEWEVLTEQQKALYRE 60 70 80 90 100 110 310 320 330 340 350 360 KIAA05 VMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWG-KGRPPGNKKMVAVREAD ::::::: . :: :::.:..:: . .. :. .: .: .... :. : KIAA15 VMRMNYETVLSLEFPFPKPDMITRLEGEE----ESQNSDEWQLQGGTSAENEESDVKPPD 120 130 140 150 160 170 370 380 390 400 410 420 KIAA05 TQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQRSWFGQFPWLVID .. .: KIAA15 WPNPMNATSQFPQPQHFDSFGLRLPRDITELPEWSEGYPFYMAMGFPGYDLSADDIAGKF 180 190 200 210 220 230 >>KIAA1559 ( 544 res) fh19195 (544 aa) initn: 212 init1: 186 opt: 206 Z-score: 205.6 bits: 48.8 E(): 2.5e-06 Smith-Waterman score: 206; 53.333% identity (76.667% similar) in 60 aa overlap (275-333:17-76) 250 260 270 280 290 300 KIAA05 LYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEWGMLDKRQKELYRDVM :.:.:::. :..::: .:: :..:::::: KIAA15 KGLTSFCSSKTMAHGSVTFRDVAIDFSQEEWEFLDPAQRDLYRDVM 10 20 30 40 310 320 330 340 350 360 KIAA05 RMNYELLASLGPAAAKPDLISKL-ERRAAPWIKDPNGPKWGKGRPPGNKKMVAVREADTQ :: . ::::. .:::.:. : :.: : KIAA15 WENYSNFISLGPSISKPDVITLLDEERKEPGMVVREGTRRYCPDLESRYRTNTLSPEKDI 50 60 70 80 90 100 >>KIAA0798 ( 682 res) hk06584 (682 aa) initn: 227 init1: 201 opt: 206 Z-score: 204.7 bits: 49.0 E(): 2.8e-06 Smith-Waterman score: 206; 43.590% identity (65.385% similar) in 78 aa overlap (257-334:20-97) 230 240 250 260 270 280 KIAA05 LRQKEITDGIHSSSDINILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTR :.: . .. .. . ...:::.: :: KIAA07 LKFLNRNLRQIQRRQRQSIPGAGHFPQQKKMINAQELLTLEDVTVEFTW 10 20 30 40 290 300 310 320 330 340 KIAA05 EEWGMLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKG ::: .: ::.:::::: : : :.: ..::: .::::: :: KIAA07 EEWQLLGPFQKDLYRDVMLEIYSNLLSMGYQVSKPDALSKLERGEEPWTMEDERHSRICP 50 60 70 80 90 100 350 360 370 380 390 400 KIAA05 RPPGNKKMVAVREADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRS KIAA07 ENNEVDDHLQDHLENQRMLKSVEQYHEHNAFGNTASQTKSLCLFRENHDTFELYIKTLKS 110 120 130 140 150 160 >>KIAA1473 ( 574 res) fj03262 (574 aa) initn: 262 init1: 202 opt: 205 Z-score: 204.4 bits: 48.7 E(): 2.9e-06 Smith-Waterman score: 205; 48.529% identity (70.588% similar) in 68 aa overlap (267-334:7-74) 240 250 260 270 280 290 KIAA05 HSSSDINILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEWGMLDKRQ : .: ..:.:::. :. ::: :: : KIAA14 AKTLGPPGSLETGVLTFRDVAIEFSLEEWQCLDTAQ 10 20 30 300 310 320 330 340 350 KIAA05 KELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKGRPPGNKKMVA ..:::.:: ::. :. .: ::.:::::. ::. :: KIAA14 QNLYRNVMLENYRNLVFVGIAASKPDLITCLEQGKEPWNVKRHEMVAEPPVVCSYFARDL 40 50 60 70 80 90 360 370 380 390 400 410 KIAA05 VREADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQRSWFGQFP KIAA14 WPKQGKKNYFQKVILRRYKKCGCENLQLRKYCKSMDECKVHKECYNGLNQCLTTTQNKIF 100 110 120 130 140 150 1111 residues in 1 query sequences 1986394 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:21 2008 done: Thu Dec 18 15:06:22 2008 Total Scan time: 0.700 Total Display time: 0.160 Function used was FASTA [version 34.26.5 April 26, 2007]