hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05521932/chunk_1/iprscan-20080502-05521932.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0538 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00323 524.8 3.6e-153 1 SM00239 163.3 2.5e-44 2 SM00233 48.2 1.1e-09 1 SM00107 29.6 0.00038 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/2 19 116 .. 1 92 [] 74.1 1.8e-17 SM00239 2/2 147 244 .. 1 92 [] 89.2 4.9e-22 SM00323 1/1 257 618 .. 1 390 [] 524.8 3.6e-153 SM00233 1/1 580 688 .. 1 82 [] 48.2 1.1e-09 SM00107 1/1 688 724 .. 1 37 [] 29.6 0.00038 Alignments of top-scoring domains: SM00239: domain 1 of 2, from 19 to 116: score 74.1, E = 1.8e-17 *->tLtvkiisArnLp........DPYVkvs.......kTkvvkktlsgf +L+++i++++nLp ++ ++++DPY++v+ ++ + +T +v ktl KIAA0538 19 SLYIRIVEGKNLPakditgssDPYCIVKvdnepiiRTATVWKTL--- 62 NPvWnEesetFeFevpp..s.LeieVyDk......dfiGrvtippnnahq +P+W+E ++++++pp+ + + + V+D++ +++d+iG+v++ KIAA0538 63 CPFWGE---EYQVHLPPtfHaVAFYVMDEdalsrdDVIGKVCLT------ 103 hsadglihlsell.ggrh.kl<-* +++ ++++ KIAA0538 104 --------RDTIAsHPKGfSG 116 SM00239: domain 2 of 2, from 147 to 244: score 89.2, E = 4.9e-22 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN +L++ +++Ar+L ++++++++DP+V+v+ +++++ T++vkk++ KIAA0538 147 RLRCSVLEARDLApkdrngtsDPFVRVRykgrtrETSIVKKSC---Y 190 PvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnnahq P+WnE tFeFe++++ L++e +D++ +++df+G+v+i+ KIAA0538 191 PRWNE---TFEFELQEgamEaLCVEAWDWdlvsrnDFLGKVVID------ 231 hsadglihlsell.ggrh.kl<-* +++l+ + +++ KIAA0538 232 --------VQRLRvVQQEeGW 244 SM00323: domain 1 of 1, from 257 to 618: score 524.8, E = 3.6e-153 *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvd.vepltasl +++g+lgsl+l+++++++++lps++Y++L++Ll+++v+ +++++++l KIAA0538 257 HDEGNLGSLQLEVRLRDETVLPSSYYQPLVHLLCHEVKlGMQGPGQL 303 asaleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvn + ++ee s+++++++At+L++lFl++g++k+fL+ L++ E++rt+++ n KIAA0538 304 IPLIEETTSTECRQDVATNLLKLFLGQGLAKDFLDLLFQLELSRTSET-N 352 tlFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsK tlFR+NsLa+Ksme+++k++G+qYLh +L+p+++k++eekk ++E+DPsK KIAA0538 353 TLFRSNSLASKSMESFLKVAGMQYLHGVLGPIINKVFEEKK-YVELDPSK 401 levndv.iSf.gdpv.egedletnlenLlqyverlfdaIinSsdrlPygL +ev+dv++S+ ++p++e e+le++++ L+++++ l++a+++S++++P ++ KIAA0538 402 VEVKDVgCSGlHRPQtEAEVLEQSAQTLRAHLGALLSALSRSVRACPAVV 451 RdickqLrqaaekrFpsa.tqdvrykaVssFvFLRFfcPAIlSPklFnLv R ++qL++++++rFp+a++++v ++aV sF++LRFf PAI+SPklF+L+ KIAA0538 452 RATFRQLFRRVRERFPGAqHENVPFIAVTSFLCLRFFSPAIMSPKLFHLR 501 dehpdpttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflk ++h+d++t+RtL+L+AK++Qn++N+++ ++ ++KE wmepl +++++ KIAA0538 502 ERHADARTSRTLLLLAKAVQNVGNMDT---PASRAKEAWMEPL--QPTVR 546 qhkdrvkdFLdelssvdepsesLvdkveelptkskPVstisgrelsllHs q + ++kdF+ +l+ d +e+++ +++r+lsl+++ KIAA0538 547 QGVAQLKDFITKLV----------DIEEKDE-------LDLQRTLSLQAP 579 lllengdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<- + e ++ ++r k+ ++pl+ fk+ yf ltt+ l+ +k KIAA0538 580 PVKEGPLFIHRTKG---------KGPLMSSSFKKLYFSLTTEALSFAK 618 * KIAA0538 - - SM00233: domain 1 of 1, from 580 to 688: score 48.2, E = 1.1e-09 *->vikeGwLlkks........k.swkkryfvLfngvLlyyksk..kpkg ++keG L + ++++++ ++s+kk yf L++ L++ k +++k++ KIAA0538 580 PVKEGPLFIHRtkgkgplmSsSFKKLYFSLTTEALSFAKMPssKKSA 626 sipLsgcsvre.p.........cFeivt.dr.....tlllqAeseeeree i L +++ e++++++ +++++ +++++d ++++t +lq++ e+++ KIAA0538 627 LIKLANIRAAEkVeeksfggshVMQVIYtDDagrpqTAYLQCKCVNELNQ 676 Wvealqsaiaka<-* W++al++++ ++ KIAA0538 677 WLSALRKVSINN 688 SM00107: domain 1 of 1, from 688 to 724: score 29.6, E = 0.00038 *->NnnllqkYHPsFwvdGkwlCCqqseKnApGCkpyeag<-* N+ ll +YHP+ + kw+CC q eK+ GC + + KIAA0538 688 NTGLLGSYHPGVFRGDKWSCCHQKEKTGQGCDKTRSR 724 //