hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05521932/chunk_1/iprscan-20080502-05521932.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0538 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00168.20.fs C2 domain 214.3 3.7e-63 2 PF00616.9.ls GTPase-activator protein for Ras-like GTPase 218.3 1.6e-62 1 PF00168.20.ls C2 domain 218.2 1.7e-62 2 PF00616.9.fs GTPase-activator protein for Ras-like GTPase 216.3 6.2e-62 1 PF00169.19.fs PH domain 35.0 3.5e-10 1 PF00169.19.ls PH domain 37.0 6.1e-08 1 PF00779.9.fs BTK motif 26.9 3.1e-06 1 PF00779.9.ls BTK motif 28.9 5.4e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/2 20 101 .. 1 88 [] 104.7 1.4e-30 PF00168.20.ls 1/2 20 101 .. 1 88 [] 106.6 6.5e-29 PF00168.20.ls 2/2 148 229 .. 1 88 [] 111.6 2.2e-30 PF00168.20.fs 2/2 148 229 .. 1 88 [] 109.6 4.9e-32 PF00616.9.ls 1/1 336 525 .. 1 200 [] 218.3 1.6e-62 PF00616.9.fs 1/1 336 525 .. 1 200 [] 216.3 6.2e-62 PF00169.19.fs 1/1 580 686 .. 1 92 [] 35.0 3.5e-10 PF00169.19.ls 1/1 580 686 .. 1 92 [] 37.0 6.1e-08 PF00779.9.fs 1/1 688 724 .. 1 37 [] 26.9 3.1e-06 PF00779.9.ls 1/1 688 724 .. 1 37 [] 28.9 5.4e-06 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 2, from 20 to 101: score 104.7, E = 1.4e-30 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl L ++++e+knLp+kD ++g+sDPY+ v+++++++ +T +++ktl KIAA0538 20 LYIRIVEGKNLPAKD-ITGSSDPYCIVKVDNEPI---IRTATVWKTL 62 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +P W E+++++ pp+++ + + V+D+d ++rdd++G+v+ KIAA0538 63 CPFWGEEYQVH-LPPTFHA-VAFYVMDEDALSRDDVIGKVC 101 PF00168.20.ls: domain 1 of 2, from 20 to 101: score 106.6, E = 6.5e-29 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl L ++++e+knLp+kD ++g+sDPY+ v+++++++ +T +++ktl KIAA0538 20 LYIRIVEGKNLPAKD-ITGSSDPYCIVKVDNEPI---IRTATVWKTL 62 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +P W E+++++ pp+++ + + V+D+d ++rdd++G+v+ KIAA0538 63 CPFWGEEYQVH-LPPTFHA-VAFYVMDEDALSRDDVIGKVC 101 PF00168.20.ls: domain 2 of 2, from 148 to 229: score 111.6, E = 2.2e-30 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl Lr+ v+eA++L+pkD +ng+sDP+V+v++ g ++ T+++kk++ KIAA0538 148 LRCSVLEARDLAPKD-RNGTSDPFVRVRYKG----RTRETSIVKKSC 189 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* P+WNEtF+Fe+ + ++ L +e +D+d ++r+dflG+v+ KIAA0538 190 YPRWNETFEFELQEGAMEA-LCVEAWDWDLVSRNDFLGKVV 229 PF00168.20.fs: domain 2 of 2, from 148 to 229: score 109.6, E = 4.9e-32 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl Lr+ v+eA++L+pkD +ng+sDP+V+v++ g ++ T+++kk++ KIAA0538 148 LRCSVLEARDLAPKD-RNGTSDPFVRVRYKG----RTRETSIVKKSC 189 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* P+WNEtF+Fe+ + ++ L +e +D+d ++r+dflG+v+ KIAA0538 190 YPRWNETFEFELQEGAMEA-LCVEAWDWDLVSRNDFLGKVV 229 PF00616.9.ls: domain 1 of 1, from 336 to 525: score 218.3, E = 1.6e-62 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL +l+ l+++E+++ ts+ ntlFR+Nsla+k+++++l+ g++YL+ +L KIAA0538 336 FLDLLFQLELSR-TSETNTLFRSNSLASKSMESFLKVAGMQYLHGVL 381 gplireiveskedlslElDPssklydgeineee.qtg.ps.lpleknlen gp+i+++ e+k+ ElDP sk++ ++ + + + + + le++ + KIAA0538 382 GPIINKVFEEKK--YVELDP-SKVEVKDVGCSGlHRPqTEaEVLEQSAQT 428 LreycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerls Lr+++ +l+a+++Sv +P r ++q++++v+++fp+a q+e + ++ KIAA0538 429 LRAHLGALLSALSRSVRACPAVVRATFRQLFRRVRERFPGA-QHENVPFI 477 avggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKv av +fl LRF f PAi+sP+lf+l e+h ++r++R+L+l+aK KIAA0538 478 AVTSFLCLRF-FSPAIMSPKLFHLR-------ERHADARTSRTLLLLAKA 519 LQnlan<-* +Qn+ n KIAA0538 520 VQNVGN 525 PF00616.9.fs: domain 1 of 1, from 336 to 525: score 216.3, E = 6.2e-62 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL +l+ l+++E+++ ts+ ntlFR+Nsla+k+++++l+ g++YL+ +L KIAA0538 336 FLDLLFQLELSR-TSETNTLFRSNSLASKSMESFLKVAGMQYLHGVL 381 gplireiveskedlslElDPssklydgeineee.qtg.ps.lpleknlen gp+i+++ e+k+ ElDP sk++ ++ + + + + + le++ + KIAA0538 382 GPIINKVFEEKK--YVELDP-SKVEVKDVGCSGlHRPqTEaEVLEQSAQT 428 LreycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerls Lr+++ +l+a+++Sv +P r ++q++++v+++fp+a q+e + ++ KIAA0538 429 LRAHLGALLSALSRSVRACPAVVRATFRQLFRRVRERFPGA-QHENVPFI 477 avggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKv av +fl LRF f PAi+sP+lf+l e+h ++r++R+L+l+aK KIAA0538 478 AVTSFLCLRF-FSPAIMSPKLFHLR-------ERHADARTSRTLLLLAKA 519 LQnlan<-* +Qn+ n KIAA0538 520 VQNVGN 525 PF00169.19.fs: domain 1 of 1, from 580 to 686: score 35.0, E = 3.5e-10 *->vikeGwLlkkg.......gkkswkkRyfvLfddvLlyykdkkkkpkg ++keG L+ ++++++ +s+kk yf L++ L++ k +++k+ KIAA0538 580 PVKEGPLFIHRtkgkgplMSSSFKKLYFSLTTEALSFAKMPSSKKSA 626 sipLsgi.qvtkvpdn..krkncFeirt.dr....etlllqaeseeerke i L +i+ +kv++ + + ++ +++ +d ++++t +lq++ e+++ KIAA0538 627 LIKLANIrAAEKVEEKsfGGSHVMQVIYtDDagrpQTAYLQCKCVNELNQ 676 Wvkaiqsair<-* W++a+++++ KIAA0538 677 WLSALRKVSI 686 PF00169.19.ls: domain 1 of 1, from 580 to 686: score 37.0, E = 6.1e-08 *->vikeGwLlkkg.......gkkswkkRyfvLfddvLlyykdkkkkpkg ++keG L+ ++++++ +s+kk yf L++ L++ k +++k+ KIAA0538 580 PVKEGPLFIHRtkgkgplMSSSFKKLYFSLTTEALSFAKMPSSKKSA 626 sipLsgi.qvtkvpdn..krkncFeirt.dr....etlllqaeseeerke i L +i+ +kv++ + + ++ +++ +d ++++t +lq++ e+++ KIAA0538 627 LIKLANIrAAEKVEEKsfGGSHVMQVIYtDDagrpQTAYLQCKCVNELNQ 676 Wvkaiqsair<-* W++a+++++ KIAA0538 677 WLSALRKVSI 686 PF00779.9.fs: domain 1 of 1, from 688 to 724: score 26.9, E = 3.1e-06 *->NnnllqkYHPsfwvdGkwlCCqqteKnApGCkkveag<-* N+ ll YHP+++ kw+CC q eK+ GC k + KIAA0538 688 NTGLLGSYHPGVFRGDKWSCCHQKEKTGQGCDKTRSR 724 PF00779.9.ls: domain 1 of 1, from 688 to 724: score 28.9, E = 5.4e-06 *->NnnllqkYHPsfwvdGkwlCCqqteKnApGCkkveag<-* N+ ll YHP+++ kw+CC q eK+ GC k + KIAA0538 688 NTGLLGSYHPGVFRGDKWSCCHQKEKTGQGCDKTRSR 724 //