hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05485450/chunk_1/iprscan-20080502-05485450.nocrc
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Query sequence: KIAA0536
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 261.5    6.8e-74   1
SM00219                                                 -56.0    1.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     708  1022 ..     1   280 []   -56.0  1.1e-07
SM00220    1/1     708  1024 ..     1   231 []   261.5  6.8e-74

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 708 to 1022: score -56.0, E = 1.1e-07
                   *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda..keeFlrEa
                             G G F  V++++ + + ++eVAVK ++++   ++  l+E+
    KIAA0536   708    YNVYGYTGQGVFSNVVRARDNaranQEVAVKIIRNNElmQKTGLKEL 754  

                   kiMkklGgkHp......NiVkLlGvcteegrrFmevePlmivmEymegGd
                   + +kkl  +  +++++ + ++L+    ++       + l++v+E  +  +
    KIAA0536   755 EFLKKL--NDAdpddkfHCLRLFRHFYHK-------QHLCLVFEPLSM-N 794  

                   LldyLrknrpk..lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLv
                   L++ L+k++++ +l  +   s++ Q       L + n+ H D+   N+Lv
    KIAA0536   795 LREVLKKYGKDvgLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILV 844  

                   genk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                   +e k++ K +DFG +  + d D +     y +      ++        AP
    KIAA0536   845 NESKtILKLCDFGSASHVADNDIT----PYLV------SR-----FYRAP 879  

                   EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk
                   E +  + +    D WS G +L+E++t G+   pg     ++n ++l++ +
    KIAA0536   880 EIIIGKSYDYGIDMWSVGCTLYELYT-GKILFPG-----KTNNHMLKLAM 923  

                   kGyRlpkPendlpiS...................................
                   + +  ++ +    i ++  ++++ +++ +    + ++ +++++ +  ++ 
    KIAA0536   924 DLKGKMPNKM---IRkgvfkdqhfdqnlnfmyievdkvterekvtvmsti 970  

                   ...................svtCPdelYdlMlqCWaedPedRPtFselve
                   +++++   +  + ++ +++       l dl  q  + dP++R + ++  +
    KIAA0536   971 nptkdlladligcqrlpedQRKKVHQLKDLLDQILMLDPAKRISINQALQ 1020 

                   rl<-*
                        
    KIAA0536  1021 HA    1022 

SM00220: domain 1 of 1, from 708 to 1024: score 261.5, E = 6.8e-74
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik......erilrEi
                      Y +    G+G F+ V +ard+ + +++vA+K+i++++  +++ l+E+
    KIAA0536   708    YNVYGYTGQGVFSNVVRARDNArANQEVAVKIIRnnelmqKTGLKEL 754  

                   kiLkk.......dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                   + Lkk ++ +++d  +  +L+ +f+++++l+lV+E ++    +L+++lkk
    KIAA0536   755 EFLKKlndadpdDKFHCLRLFRHFYHkQHLCLVFEPLSM---NLREVLKK 801  

                   rgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..
                   +g+   +++l+ + +r+y +Q+++aL+ L + +I+H D+KP+NiL+++++
    KIAA0536   802 YGK---DVGLHIkAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNEsk 848  

                   .hvKlaDFGlArql.....ttfvGTpeYmAPEvl...gYgkpavDiWSlG
                   + +Kl+DFG+A ++ +++ t + ++++Y+APE++ +++Y++  +D+WS+G
    KIAA0536   849 tILKLCDFGSASHVadndiTPYLVSRFYRAPEIIigkSYDY-GIDMWSVG 897  

                   cilyElltGkpPFp..qldlifkkig........................
                   c+lyEl+tGk +Fp+++ + ++k+ ++ +++ +++  +++  ++ + + +
    KIAA0536   898 CTLYELYTGKILFPgkTNNHMLKLAMdlkgkmpnkmirkgvfkdqhfdqn 947  

                   ..............................................Spea
                    +  + + ++ +++++ +  ++ +++++   +  +  + +++ +++ +++
    KIAA0536   948 lnfmyievdkvterekvtvmstinptkdlladligcqrlpedqrkkVHQL 997  

                   kdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   kdL++++L  dP+kR+++++aL+       H f+   
    KIAA0536   998 KDLLDQILMLDPAKRISInQALQ-------HAFI    1024 

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