hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05471275/chunk_1/iprscan-20080502-05471275.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0535 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08474.2.ls Myelin transcription factor 1 538.7 5.6e-159 1 PF08474.2.fs Myelin transcription factor 1 536.9 1.9e-158 1 PF01530.9.ls Zinc finger, C2HC type 402.7 4.9e-118 6 PF01530.9.fs Zinc finger, C2HC type 390.8 1.9e-114 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01530.9.ls 1/6 365 395 .. 1 31 [] 62.0 1.8e-15 PF01530.9.fs 1/6 365 395 .. 1 31 [] 60.0 4.3e-15 PF01530.9.fs 2/6 409 439 .. 1 31 [] 65.1 2e-16 PF01530.9.ls 2/6 409 439 .. 1 31 [] 67.1 5.3e-17 PF08474.2.fs 1/1 478 716 .. 1 270 [] 536.9 1.9e-158 PF08474.2.ls 1/1 478 716 .. 1 270 [] 538.7 5.6e-159 PF01530.9.ls 3/6 721 751 .. 1 31 [] 70.7 4.3e-18 PF01530.9.fs 3/6 721 751 .. 1 31 [] 68.7 1.7e-17 PF01530.9.fs 4/6 765 795 .. 1 31 [] 72.5 1.2e-18 PF01530.9.ls 4/6 765 795 .. 1 31 [] 74.5 3.1e-19 PF01530.9.ls 5/6 813 843 .. 1 31 [] 68.6 1.8e-17 PF01530.9.fs 5/6 813 843 .. 1 31 [] 66.6 7.3e-17 PF01530.9.fs 6/6 866 896 .. 1 31 [] 57.8 1.6e-14 PF01530.9.ls 6/6 866 896 .. 1 31 [] 59.8 8.1e-15 Alignments of top-scoring domains: PF01530.9.ls: domain 1 of 6, from 365 to 395: score 62.0, E = 1.8e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e kCP+pGCdG+GHvtG y +HrslsGCP++ KIAA0535 365 ETKCPIPGCDGTGHVTGLYPHHRSLSGCPHK 395 PF01530.9.fs: domain 1 of 6, from 365 to 395: score 60.0, E = 4.3e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e kCP+pGCdG+GHvtG y +HrslsGCP++ KIAA0535 365 ETKCPIPGCDGTGHVTGLYPHHRSLSGCPHK 395 PF01530.9.fs: domain 2 of 6, from 409 to 439: score 65.1, E = 2e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv++++++HrslsGCP+a KIAA0535 409 VLKCPTPGCTGRGHVNSNRNTHRSLSGCPIA 439 PF01530.9.ls: domain 2 of 6, from 409 to 439: score 67.1, E = 5.3e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv++++++HrslsGCP+a KIAA0535 409 VLKCPTPGCTGRGHVNSNRNTHRSLSGCPIA 439 PF08474.2.fs: domain 1 of 1, from 478 to 716: score 536.9, E = 1.9e-158 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT + s+ Ait+PRA +KE+EKF+Kv+FdYaSFDaqvFGKR P++QT KIAA0535 478 FPSQ-AITSPRATVSKEQEKFGKVPFDYASFDAQVFGKR---PLIQT 520 seiSPKayqdAkpFpKdsSPessssSsYvksssSssSaGGGasasSTvrk ++ + +pF Pes+++ ++vk+ + ++Sa Ga+++S r+ KIAA0535 521 VQG-----RKTPPF-----PESKHFPNPVKFPNRLPSA--GAHTQSPGRA 558 SSFDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadiE SS+ Y+q +E++H+AAA+AILNLSTRCRE++d+LS+KPQ+L ak+a+iE KIAA0535 559 SSYSYGQCSEDTHIAAAAAILNLSTRCREATDILSNKPQSL-HAKGAEIE 607 VDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPSS VDENGTLDLSMkKnR++dks P +SS +si+Tp+s Sp+k SS KIAA0535 608 VDENGTLDLSMKKNRILDKSAPLTSSNTSIPTPSS--SPFKT------SS 649 alvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfalee lvna++yQAl++q++Wd P++Y+ K ++++EeE kekdPv +le+ KIAA0535 650 ILVNAAFYQALCDQEGWDTPINYS--KTHGKTEEE-KEKDPVS---SLEN 693 leekkfagEvsIPSPKPkyeeRk<-* leekkf+gE+sIPSPKPk++ R+ KIAA0535 694 LEEKKFPGEASIPSPKPKLHARD 716 PF08474.2.ls: domain 1 of 1, from 478 to 716: score 538.7, E = 5.6e-159 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT + s+ Ait+PRA +KE+EKF+Kv+FdYaSFDaqvFGKR P++QT KIAA0535 478 FPSQ-AITSPRATVSKEQEKFGKVPFDYASFDAQVFGKR---PLIQT 520 seiSPKayqdAkpFpKdsSPessssSsYvksssSssSaGGGasasSTvrk ++ + +pF Pes+++ ++vk+ + ++Sa Ga+++S r+ KIAA0535 521 VQG-----RKTPPF-----PESKHFPNPVKFPNRLPSA--GAHTQSPGRA 558 SSFDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadiE SS+ Y+q +E++H+AAA+AILNLSTRCRE++d+LS+KPQ+L ak+a+iE KIAA0535 559 SSYSYGQCSEDTHIAAAAAILNLSTRCREATDILSNKPQSL-HAKGAEIE 607 VDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPSS VDENGTLDLSMkKnR++dks P +SS +si+Tp+s Sp+k SS KIAA0535 608 VDENGTLDLSMKKNRILDKSAPLTSSNTSIPTPSS--SPFKT------SS 649 alvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfalee lvna++yQAl++q++Wd P++Y+ K ++++EeE kekdPv +le+ KIAA0535 650 ILVNAAFYQALCDQEGWDTPINYS--KTHGKTEEE-KEKDPVS---SLEN 693 leekkfagEvsIPSPKPkyeeRk<-* leekkf+gE+sIPSPKPk++ R+ KIAA0535 694 LEEKKFPGEASIPSPKPKLHARD 716 PF01530.9.ls: domain 3 of 6, from 721 to 751: score 70.7, E = 4.3e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CPtpGCdGsGHvtG+y+sHrs+sGCPla KIAA0535 721 LITCPTPGCDGSGHVTGNYASHRSVSGCPLA 751 PF01530.9.fs: domain 3 of 6, from 721 to 751: score 68.7, E = 1.7e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CPtpGCdGsGHvtG+y+sHrs+sGCPla KIAA0535 721 LITCPTPGCDGSGHVTGNYASHRSVSGCPLA 751 PF01530.9.fs: domain 4 of 6, from 765 to 795: score 72.5, E = 1.2e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCPtpGCdGsGHvtG+y+sHrslsGCP+a KIAA0535 765 ELKCPTPGCDGSGHVTGNYASHRSLSGCPRA 795 PF01530.9.ls: domain 4 of 6, from 765 to 795: score 74.5, E = 3.1e-19 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCPtpGCdGsGHvtG+y+sHrslsGCP+a KIAA0535 765 ELKCPTPGCDGSGHVTGNYASHRSLSGCPRA 795 PF01530.9.ls: domain 5 of 6, from 813 to 843: score 68.6, E = 1.8e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCP+ GCdG+GH++GkytsHr++sGCPla KIAA0535 813 ELKCPVIGCDGQGHISGKYTSHRTASGCPLA 843 PF01530.9.fs: domain 5 of 6, from 813 to 843: score 66.6, E = 7.3e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCP+ GCdG+GH++GkytsHr++sGCPla KIAA0535 813 ELKCPVIGCDGQGHISGKYTSHRTASGCPLA 843 PF01530.9.fs: domain 6 of 6, from 866 to 896: score 57.8, E = 1.6e-14 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CP+pGC+G+GHv++ + +HrslsGCPl+ KIAA0535 866 LPHCPLPGCNGLGHVNNVFVTHRSLSGCPLN 896 PF01530.9.ls: domain 6 of 6, from 866 to 896: score 59.8, E = 8.1e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CP+pGC+G+GHv++ + +HrslsGCPl+ KIAA0535 866 LPHCPLPGCNGLGHVNNVFVTHRSLSGCPLN 896 //