hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05453389/chunk_1/iprscan-20080502-05453389.nocrc
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Query sequence: KIAA0534
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00423                                                 148.6    6.3e-40   5
SM00034                                                  82.5    5.3e-20   1
SM00180                                                  34.4    1.6e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00423    1/5     263   306 ..     1    56 []    16.2     0.96
SM00423    2/5     315   358 ..     1    56 []    33.0  4.1e-05
SM00423    3/5     364   409 ..     1    56 []    24.9    0.011
SM00034    1/1     397   522 ..     1   141 []    82.5  5.3e-20
SM00423    4/5     538   588 ..     1    56 []    32.1  7.7e-05
SM00423    5/5     591   661 ..     1    56 []    42.4  5.9e-08
SM00180    1/2     663   706 ..     1    42 []    28.9  0.00068
SM00180    2/2     709   755 ..     1    42 []     5.4      3.1

Alignments of top-scoring domains:
SM00423: domain 1 of 5, from 263 to 306: score 16.2, E = 0.96
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      +C ++  ++ + C  a+++ +C W    ++C ++++  +       n
    KIAA0534   263    NCKAF--RDEELCKNAGPGIKCVWN--KNHCESWeSGNT------NN 299  

                   wssgpssqCp<-*
                   +++    +Cp   
    KIAA0534   300 ILR---AKCP    306  

SM00423: domain 2 of 5, from 315 to 358: score 33.0, E = 4.1e-05
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      rC +y   +C++C ++ ++  C+WC  +++C+++++ C+    s+ n
    KIAA0534   315    RCYRY--ADCASCTANTNG--CQWCD-DKKCISAnSNCSM---SVKN 353  

                   wssgpssqCp<-*
                   ++     +C+   
    KIAA0534   354 YT-----KCH    358  

SM00423: domain 3 of 5, from 364 to 409: score 24.9, E = 0.011
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg..erCderrgsrq
                       C+++  tsC +C l+ +   C+W+ +++ C++++ + C+      +
    KIAA0534   364    ICNKL--TSCKSCSLNLN---CQWDQRQQECQALpaHLCG------E 399  

                   nwssgpssqCp<-*
                    ws++ ++ C    
    KIAA0534   400 GWSHI-GDACL    409  

SM00034: domain 1 of 1, from 397 to 522: score 82.5, E = 5.3e-20
                   *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
                      C    +gW +        g+ C +++++++++++A+ +C +l     
    KIAA0534   397    C---GEGWSHI-------GDACLRVNSsrenYDNAKLYCYNLS---- 429  

                   rvkgghLasIhseeEndFltsl..........yWIGLs....g.wqWsDG
                       g+Las ++++E +F++   ++ ++++ + W+GL++ + + w W+D 
    KIAA0534   430 ----GNLASLTTSKEVEFVLDEiqkytqqkvsPWVGLRkiniSyWGWEDM 475  

                   sgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls......W
                   s      + +++   W pg    ePn        ++g C++l +    + 
    KIAA0534   476 S------PFTNTTLQWLPG----EPN--------DSGFCAYLEraavagL 507  

                   ndvsCtskdpadklpfiCk<-*
                   +  +Cts    + ++ +C+   
    KIAA0534   508 KANPCTS----MANGLVCE    522  

SM00423: domain 4 of 5, from 538 to 588: score 32.1, E = 7.7e-05
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.........erCd
                      +Cs    tsCs C +++    C+WCss++rC++++    + + ++C 
    KIAA0534   538    PCSLR--TSCSNCTSNGME--CMWCSSTKRCVDSnayiisfpyGQCL 580  

                   errgsrqnwssgpssqCp<-*
                   e       w      +C+   
    KIAA0534   581 E-------WQT---ATCS    588  

SM00423: domain 5 of 5, from 591 to 661: score 42.4, E = 5.9e-08
                   *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........
                      +Cs +  ++C++Cl+ +    CgWC +++++++g+C++g+++++ + 
    KIAA0534   591    NCSGL--RTCGQCLEQPG---CGWCNDpsntgRGHCIEGssrgpmkl 632  

                   ............erCderrgsrqnwssgpssqCp<-*
                    + ++++   +++ C+++++  ++ws++   qCp   
    KIAA0534   633 igmhhnemvldtNLCPKEKN--YEWSFI---QCP    661  

SM00180: domain 1 of 2, from 663 to 706: score 28.9, E = 0.00068
                   *->CdCnlpppvG...CdptGqClnCkpnttGGrrCdderCapGyy....
                      C+Cn     G+++C  + +C+ Ck  ttG  +C    C pGyy++++
    KIAA0534   663    CQCN-----GhstCINNNVCEQCKNLTTG-KQCQ--DCMPGYYgdpt 701  

                   ...gC<-*
                   +++ C   
    KIAA0534   702 nggQC    706  

SM00180: domain 2 of 2, from 709 to 755: score 5.4, E = 3.1
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C C+     G+ + C+ +tG C  C    + G++C    C       
    KIAA0534   709    CTCS-----GhaniCHLhTGKCF-CTTKGIKGDQCQ--LCDSENRyv 747  

                   ......gC<-*
                   +++ +++C   
    KIAA0534   748 gnplrgTC    755  

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