hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05435492/chunk_1/iprscan-20080502-05435492.nocrc
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Query sequence: KIAA0533
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00282                                                 381.2   6.2e-110   5
SM00180                                                  78.1    1.1e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00180    1/2      20    64 ..     1    42 []    50.5  2.1e-10
SM00180    2/2      67   114 ..     1    42 []    27.6   0.0018
SM00282    1/5     708   858 ..     1   137 []    55.6  6.6e-12
SM00282    2/5     912  1049 ..     1   137 []    58.9  6.5e-13
SM00282    3/5    1095  1220 ..     1   137 []    57.0  2.4e-12
SM00282    4/5    1312  1449 ..     1   137 []   102.6  4.5e-26
SM00282    5/5    1491  1623 ..     1   137 []   107.1    2e-27

Alignments of top-scoring domains:
SM00180: domain 1 of 2, from 20 to 64: score 50.5, E = 2.1e-10
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C C    p+ ++++C+p++GqC+ C+p+t+G ++C   +CapGy++ 
    KIAA0533    20    CACG---PAAegseCHPqSGQCH-CRPGTMG-PQCR--ECAPGYWgl 59   

                   ...gC<-*
                   +++gC   
    KIAA0533    60 peqGC    64   

SM00180: domain 2 of 2, from 67 to 114: score 27.6, E = 0.0018
                   *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy....
                      C+C+     G++Cdp+tG+C  C p+  G +rCd   C   +  + +
    KIAA0533    67    CQCP-----GgrCDPhTGRCN-CPPGLSG-ERCD--TCSQQHQvpvp 104  

                   ........gC<-*
                   +++ +++ +C   
    KIAA0533   105 ggpvghsiHC    114  

SM00282: domain 1 of 5, from 708 to 858: score 55.6, E = 6.6e-12
                   *->t.lsisfsFrTtspn.......GlLlyag....ggdflaleLvlEDs
                        + + f+++  +p++++++++ + +y+g+++ +gd++ ++L+    
    KIAA0533   708    AyTALKFYLQGPEPEpgqgtedRFVMYMGsrqaTGDYMGVSLR---- 750  

                   dgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsverngrsv
                     d +++ +y+lG+   +gpa+l+ d d        q+  Vs+ r+ + +
    KIAA0533   751 --DKKVHWVYQLGE---AGPAVLSIDED-----IGEQFAAVSLDRTLQFG 790  

                   tLsVDggnpvsges..........t.LdldkeesgplylGGlPe......
                   ++sV  ++++ +e+++++  ++ +  L+l + ++  +y+GG P++ ++++
    KIAA0533   791 HMSVTVERQMIQETkgdtvapgaeGlLNLRP-DDFVFYVGGYPStftppp 839  

                   lpvspgFrGCirnlrvngk<-*
                   l+  pg+rGCi+  ++n++   
    KIAA0533   840 LLRFPGYRGCIEMDTLNEE    858  

SM00282: domain 2 of 5, from 912 to 1049: score 58.9, E = 6.5e-13
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                      t+ +++ ++r  s +G+L+++ ++++fl+l+++      +G lvl y
    KIAA0533   912    TtKRFEQELRLVSYSGVLFFLKqQSQFLCLAVQ------EGSLVLLY 952  

                   dlGssttggparltsdsdrptplnDGqWHrVsvern...grsvtLsVDgg
                   d+G+    g ++  + +  p p        ++v   ++++++v + V   
    KIAA0533   953 DFGA----GLKKAVPLQ--PPPPLTSASKAIQVFLLggsRKRVLVRVE-R 995  

                   npvsges..t.LdldkeesgplylGGlPe..........lpvspgFrGCi
                   ++v+ + ++ +L+l     + +ylGG+P+++ +++ +   p+  + rGC+
    KIAA0533   996 ATVYSVEqdNdLELA----DAYYLGGVPPdqlppslrwlFPTGGSVRGCV 1041 

                   rnlrvngk<-*
                   ++++  gk   
    KIAA0533  1042 KGIKALGK    1049 

SM00282: domain 3 of 5, from 1095 to 1220: score 57.0, E = 2.4e-12
                   *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry
                       + +  f F   ++++lL y ++++   +++L+      +Gr+ l++
    KIAA0533  1095    GnVYSGFGFHSAQDSALLYYRAsPDGLCQVSLQ------QGRVSLQL 1135 

                   dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv
                              ++ ++      ++DG +H V+++ n + v L+VD+++++
    KIAA0533  1136 LRT--------EVKTQ----AGFADGAPHYVAFYSNATGVWLYVDDQLQQ 1173 

                   sges....t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk<-*
                       ++++++L++++e++ +l lGGlPe+ +  +F+GCi+n++v++    
    KIAA0533  1174 MKPHrgppPeLQPQPEGPPRLLLGGLPESGTIYNFSGCISNVFVQRL    1220 

SM00282: domain 4 of 5, from 1312 to 1449: score 102.6, E = 4.5e-26
                   *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv
                      +  s+s+++ ++s++GlLl++++ ++g+  lal+L+      +G+ v
    KIAA0533  1312    NwPSLSMHVLPRSSRGLLLFTArlrpGSPSLALFLS------NGHFV 1352 

                   lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg
                    +++  +    ++ r +s     ++   G+WH+Vsv+++++++ L+ Dg 
    KIAA0533  1353 AQMEGLG----TRLRAQSR----QRSRPGRWHKVSVRWEKNRILLVTDGA 1394 

                   npvsges.....t.LdldkeesgplylGGlPe......lpvspgFrGCir
                   +  s+e +++++++ + ++  +  l++GGlP+++++++lpv+ gF+GC++
    KIAA0533  1395 RAWSQEGphrqhQgAEHPQ--PHTLFVGGLPAsshsskLPVTVGFSGCVK 1442 

                   nlrvngk<-*
                   +lr++g+   
    KIAA0533  1443 RLRLHGR    1449 

SM00282: domain 5 of 5, from 1491 to 1623: score 107.1, E = 2e-27
                   *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl
                      ++  +++++r+ + +Gl++++g+ ++  +l+l++       + ++ l
    KIAA0533  1491    PdVGLELEVRPLAVTGLIFHLGqarTPPYLQLQVT------EKQVLL 1531 

                   rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.g
                   r d G+    g+++++++   p  l+DGqWHr++v  +g+ ++L VD ++
    KIAA0533  1532 RADDGA----GEFSTSVTR--PSVLCDGQWHRLAVMKSGNVLRLEVDAqS 1575 

                   npvsges..t.LdldkeesgplylGGlPe....lpvspgFrGCirnlrvn
                   n+++g         +    +plylGGlPe+    p+ p + GC+r+l vn
    KIAA0533  1576 NHTVGPLlaAaAGAP----APLYLGGLPEpmavQPWPPAYCGCMRRLAVN 1621 

                   gk<-*
                   +    
    KIAA0533  1622 RS    1623 

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