hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05435492/chunk_1/iprscan-20080502-05435492.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0533 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06008.4.ls Laminin Domain I 346.3 4.7e-101 1 PF06008.4.fs Laminin Domain I 345.0 1.2e-100 2 PF02210.14.ls Laminin G domain 318.2 1.4e-92 5 PF02210.14.fs Laminin G domain 317.5 2.2e-92 5 PF06009.3.ls Laminin Domain II 179.7 6.6e-51 1 PF06009.3.fs Laminin Domain II 177.8 2.5e-50 1 PF00054.13.fs Laminin G domain 104.3 1.4e-29 3 PF00054.13.ls Laminin G domain 96.5 7.5e-26 2 PF00053.14.fs Laminin EGF-like (Domains III and V) 73.6 1.1e-20 3 PF00053.14.ls Laminin EGF-like (Domains III and V) 51.3 3.1e-12 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00053.14.fs 2/3 20 64 .. 1 59 [] 47.6 3.8e-13 PF00053.14.ls 1/2 20 64 .. 1 59 [] 49.4 1.1e-11 PF06008.4.fs 1/2 141 401 .. 1 274 [] 344.4 1.8e-100 PF06008.4.ls 1/1 141 401 .. 1 274 [] 346.3 4.7e-101 PF06009.3.ls 1/1 582 712 .. 1 144 [] 179.7 6.6e-51 PF06009.3.fs 1/1 582 712 .. 1 144 [] 177.8 2.5e-50 PF02210.14.fs 2/5 920 1049 .. 1 141 [] 46.4 3.4e-13 PF02210.14.ls 2/5 920 1049 .. 1 141 [] 48.3 2.4e-11 PF02210.14.fs 3/5 1103 1220 .. 1 141 [] 66.2 5.6e-19 PF02210.14.ls 3/5 1103 1220 .. 1 141 [] 68.0 2.8e-17 PF02210.14.fs 4/5 1320 1449 .. 1 141 [] 91.3 2.7e-26 PF00054.13.fs 2/3 1320 1452 .. 1 159 [] 35.9 6e-10 PF00054.13.ls 1/2 1320 1452 .. 1 159 [] 37.8 3.6e-08 PF02210.14.ls 4/5 1320 1449 .. 1 141 [] 93.2 7.2e-25 PF00054.13.fs 3/3 1499 1626 .. 1 159 [] 56.9 5.6e-16 PF02210.14.ls 5/5 1499 1623 .. 1 141 [] 96.9 5.6e-26 PF02210.14.fs 5/5 1499 1623 .. 1 141 [] 95.1 2.2e-27 PF00054.13.ls 2/2 1499 1626 .. 1 159 [] 58.7 1.7e-14 Alignments of top-scoring domains: PF00053.14.fs: domain 2 of 3, from 20 to 64: score 47.6, E = 3.8e-13 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C p++ + ++C++ +GqC+ C+p+++G++C +C+pGy KIAA0533 20 CACGPAA-EG-SECHP-------QSGQCH-CRPGTMGPQCRECAPGY 56 yglpsgdpgqgC<-* +g p+qgC KIAA0533 57 WG----LPEQGC 64 PF00053.14.ls: domain 1 of 2, from 20 to 64: score 49.4, E = 1.1e-11 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C p++ + ++C++ +GqC+ C+p+++G++C +C+pGy KIAA0533 20 CACGPAA-EG-SECHP-------QSGQCH-CRPGTMGPQCRECAPGY 56 yglpsgdpgqgC<-* +g p+qgC KIAA0533 57 WG----LPEQGC 64 PF06008.4.fs: domain 1 of 2, from 141 to 401: score 344.4, E = 1.8e-100 *->qLdevGDAllslNslTGalpapykilanienltqqLserlskisatk q l+++N++++a++++++++a+i++l++qL+++l+++++t+ KIAA0533 141 Q-------LRGINASSMAWARLHRLNASIADLQSQLRSPLGPRHETA 180 rqledlEkalskLaqdaenLqkkankalakaqkvnaeiertlghAkqLae +qle+lE+++++L+qda++L+++a++++++a+++ a++e+tlghAk+L++ KIAA0533 181 QQLEVLEQQSTSLGQDARRLGGQAVGTRDQASQLLAGTEATLGHAKTLLA 230 aikklrdnikeileklaglgeTlanaealpssaLsrmlaeAqrmLeeiRe ai++++++++e+++++++lg ana+a+++++L r+lae++r+L+e+R+ KIAA0533 231 AIRAVDRTLSELMSQTGHLGL--ANASAPSGEQLLRTLAEVERLLWEMRA 278 RddmfqkqleeAeaelkaAeeLLsrvqtwfqklqeenegLfealkddLne R d +++++++Aeael+aA++LL+rvq+++++l+een++L+++++d+L++ KIAA0533 279 R-D-LGAPQAAAEAELAAAQRLLARVQEQLSSLWEENQALATQTRDRLAQ 326 yeakLsDlrelldeAqakDtrdAerlnlanqkrlreieekkeeveelknq +ea+L+Dlre+l++A+++ tr+A++ln++nq+rl+e+ ++k+e+++++++ KIAA0533 327 HEAGLMDLREALNRAVDA-TREAQELNSRNQERLEEALQRKQELSRDNAT 375 ieetLatgrdsLdqanlElLqemdqal<-* +++tL+++rd+L+++++ lL+++dqa+ KIAA0533 376 LQATLHAARDTLASVFR-LLHSLDQAK 401 PF06008.4.ls: domain 1 of 1, from 141 to 401: score 346.3, E = 4.7e-101 *->qLdevGDAllslNslTGalpapykilanienltqqLserlskisatk q l+++N++++a++++++++a+i++l++qL+++l+++++t+ KIAA0533 141 Q-------LRGINASSMAWARLHRLNASIADLQSQLRSPLGPRHETA 180 rqledlEkalskLaqdaenLqkkankalakaqkvnaeiertlghAkqLae +qle+lE+++++L+qda++L+++a++++++a+++ a++e+tlghAk+L++ KIAA0533 181 QQLEVLEQQSTSLGQDARRLGGQAVGTRDQASQLLAGTEATLGHAKTLLA 230 aikklrdnikeileklaglgeTlanaealpssaLsrmlaeAqrmLeeiRe ai++++++++e+++++++lg ana+a+++++L r+lae++r+L+e+R+ KIAA0533 231 AIRAVDRTLSELMSQTGHLGL--ANASAPSGEQLLRTLAEVERLLWEMRA 278 RddmfqkqleeAeaelkaAeeLLsrvqtwfqklqeenegLfealkddLne R d +++++++Aeael+aA++LL+rvq+++++l+een++L+++++d+L++ KIAA0533 279 R-D-LGAPQAAAEAELAAAQRLLARVQEQLSSLWEENQALATQTRDRLAQ 326 yeakLsDlrelldeAqakDtrdAerlnlanqkrlreieekkeeveelknq +ea+L+Dlre+l++A+++ tr+A++ln++nq+rl+e+ ++k+e+++++++ KIAA0533 327 HEAGLMDLREALNRAVDA-TREAQELNSRNQERLEEALQRKQELSRDNAT 375 ieetLatgrdsLdqanlElLqemdqal<-* +++tL+++rd+L+++++ lL+++dqa+ KIAA0533 376 LQATLHAARDTLASVFR-LLHSLDQAK 401 PF06009.3.ls: domain 1 of 1, from 582 to 712: score 179.7, E = 6.6e-51 *->sKemAdeAnetaaaVlkelepiqtnvsnikaslsklngdleetnklv +K++A+eA +ta+ V+++l+++q nv++++ ++++l+g+ KIAA0533 582 AKAVAAEAQDTATRVQSQLQAMQENVERWQGQYEGLRGQ-------- 620 sdpsankaiddArrsvrklnklapyLldkLkpleklsvasqsrtdslsrn ++ +a++dA+ sv++l+k++p+Ll+kL+ le++ v+++s++ ls++ KIAA0533 621 ---DLGQAVLDAGHSVSTLEKTLPQLLAKLSILENRGVHNASLA--LSAS 665 isriKelIaqARkaAnkIkVsvnfdGdsglelrppisltdlaaltsl<-* i+r++elIaqAR aA+k+kV+++f+G+sg+ lr+p++l+dlaa+t+l KIAA0533 666 IGRVRELIAQARGAASKVKVPMKFNGRSGVQLRTPRDLADLAAYTAL 712 PF06009.3.fs: domain 1 of 1, from 582 to 712: score 177.8, E = 2.5e-50 *->sKemAdeAnetaaaVlkelepiqtnvsnikaslsklngdleetnklv +K++A+eA +ta+ V+++l+++q nv++++ ++++l+g+ KIAA0533 582 AKAVAAEAQDTATRVQSQLQAMQENVERWQGQYEGLRGQ-------- 620 sdpsankaiddArrsvrklnklapyLldkLkpleklsvasqsrtdslsrn ++ +a++dA+ sv++l+k++p+Ll+kL+ le++ v+++s++ ls++ KIAA0533 621 ---DLGQAVLDAGHSVSTLEKTLPQLLAKLSILENRGVHNASLA--LSAS 665 isriKelIaqARkaAnkIkVsvnfdGdsglelrppisltdlaaltsl<-* i+r++elIaqAR aA+k+kV+++f+G+sg+ lr+p++l+dlaa+t+l KIAA0533 666 IGRVRELIAQARGAASKVKVPMKFNGRSGVQLRTPRDLADLAAYTAL 712 PF02210.14.fs: domain 2 of 5, from 920 to 1049: score 46.4, E = 3.4e-13 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl +R + +G+L+++ ++++ fl+L +++G lvl yd+ KIAA0533 920 LRL-VSYSGVLFFLKQQsQ-----------FLCLAVQEGSLVLLYDF 954 G..sgg.vlltsg.pl.nDGqWHtVsverngrs.vtLsVDgg.vv.g.sp G + + v l +++pl++ + +V + r++v + V +v +++++ KIAA0533 955 GagLKKaVPLQPPpPLtSASKAIQVFLLGGSRKrVLVRVERAtVYsVeQD 1004 gssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnv + l+l +ylGG+p++ ++++++++++++ +++ +GC++++ KIAA0533 1005 N-----DLELADAYYLGGVPPD-QLPPSLRWLFPT----GgSVRGCVKGI 1044 ringe<-* + g+ KIAA0533 1045 KALGK 1049 PF02210.14.ls: domain 2 of 5, from 920 to 1049: score 48.3, E = 2.4e-11 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl +R + +G+L+++ ++++ fl+L +++G lvl yd+ KIAA0533 920 LRL-VSYSGVLFFLKQQsQ-----------FLCLAVQEGSLVLLYDF 954 G..sgg.vlltsg.pl.nDGqWHtVsverngrs.vtLsVDgg.vv.g.sp G + + v l +++pl++ + +V + r++v + V +v +++++ KIAA0533 955 GagLKKaVPLQPPpPLtSASKAIQVFLLGGSRKrVLVRVERAtVYsVeQD 1004 gssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnv + l+l +ylGG+p++ ++++++++++++ +++ +GC++++ KIAA0533 1005 N-----DLELADAYYLGGVPPD-QLPPSLRWLFPT----GgSVRGCVKGI 1044 ringe<-* + g+ KIAA0533 1045 KALGK 1049 PF02210.14.fs: domain 3 of 5, from 1103 to 1220: score 66.2, E = 5.6e-19 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F q+++lL y ++ +g +++L++Gr+ l++ KIAA0533 1103 FHS-AQDSALLYYRASPdG-----------LCQVSLQQGRVSLQL-- 1135 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd ++ + ++ ++DG H V++ n + v+L VD++ ++ + g+++ KIAA0533 1136 ---LrTEVKTQaGFADGAPHYVAFYSNATGVWLYVDDQlQQmKpHRGPPP 1182 tl..slnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri +l+++++ + +l lGGlpes+ +F GCi+nv++ KIAA0533 1183 ELqpQPEGPPRLLLGGLPESGT---------------IyNFSGCISNVFV 1217 nge<-* KIAA0533 1218 QRL 1220 PF02210.14.ls: domain 3 of 5, from 1103 to 1220: score 68.0, E = 2.8e-17 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F q+++lL y ++ +g +++L++Gr+ l++ KIAA0533 1103 FHS-AQDSALLYYRASPdG-----------LCQVSLQQGRVSLQL-- 1135 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd ++ + ++ ++DG H V++ n + v+L VD++ ++ + g+++ KIAA0533 1136 ---LrTEVKTQaGFADGAPHYVAFYSNATGVWLYVDDQlQQmKpHRGPPP 1182 tl..slnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri +l+++++ + +l lGGlpes+ +F GCi+nv++ KIAA0533 1183 ELqpQPEGPPRLLLGGLPESGT---------------IyNFSGCISNVFV 1217 nge<-* KIAA0533 1218 QRL 1220 PF02210.14.fs: domain 4 of 5, from 1320 to 1449: score 91.3, E = 2.7e-26 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl + + +++ GlLl+++ + +s+ laL+L +G+ v +++ KIAA0533 1320 VLP-RSSRGLLLFTARLrP-------GSP-SLALFLSNGHFVAQMEG 1357 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd g+++ s ++ G+WH+Vsv+++++++ L+ Dg ++ +++ p+ ++ KIAA0533 1358 L-GTrLRAQSRqRSRPGRWHKVSVRWEKNRILLVTDGArAWsQeGPHRQH 1406 tlslnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin ++ ++ ++l++GGlp ss+ss+l++ + gF GC++++r+ KIAA0533 1407 QGAEHPQPHtLFVGGLPASSHSSKLPV---------TvGFSGCVKRLRLH 1447 ge<-* g+ KIAA0533 1448 GR 1449 PF00054.13.fs: domain 2 of 3, from 1320 to 1452: score 35.9, E = 6e-10 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl + +++ GlLl ++ + ++ + lal L +G+ ++ KIAA0533 1320 VLPRSSRGLLL--FTARLRPGS-------PSLALFLSNGHFVAQMEG 1357 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG + + s ++ +G+WH+v++ ++ ++ L dg ++ KIAA0533 1358 LGT---RLRAQSRQR-SRPGRWHKVSVRWEKNRILLVTDGARA------- 1396 svvtgesplgattesttLdvdgk..LyvGGlPeldqavkarrlaispsfk +++ g++ ++ + +++L+vGGlP + ++l+++++f+ KIAA0533 1397 ----WSQE-GPHRQHQGAEHPQPhtLFVGGLP---ASSHSSKLPVTVGFS 1438 GCirdviingkpld<-* GC++++ + g+pl+ KIAA0533 1439 GCVKRLRLHGRPLG 1452 PF00054.13.ls: domain 1 of 2, from 1320 to 1452: score 37.8, E = 3.6e-08 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl + +++ GlLl ++ + ++ + lal L +G+ ++ KIAA0533 1320 VLPRSSRGLLL--FTARLRPGS-------PSLALFLSNGHFVAQMEG 1357 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG + + s ++ +G+WH+v++ ++ ++ L dg ++ KIAA0533 1358 LGT---RLRAQSRQR-SRPGRWHKVSVRWEKNRILLVTDGARA------- 1396 svvtgesplgattesttLdvdgk..LyvGGlPeldqavkarrlaispsfk +++ g++ ++ + +++L+vGGlP + ++l+++++f+ KIAA0533 1397 ----WSQE-GPHRQHQGAEHPQPhtLFVGGLP---ASSHSSKLPVTVGFS 1438 GCirdviingkpld<-* GC++++ + g+pl+ KIAA0533 1439 GCVKRLRLHGRPLG 1452 PF02210.14.ls: domain 4 of 5, from 1320 to 1449: score 93.2, E = 7.2e-25 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl + + +++ GlLl+++ + +s+ laL+L +G+ v +++ KIAA0533 1320 VLP-RSSRGLLLFTARLrP-------GSP-SLALFLSNGHFVAQMEG 1357 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd g+++ s ++ G+WH+Vsv+++++++ L+ Dg ++ +++ p+ ++ KIAA0533 1358 L-GTrLRAQSRqRSRPGRWHKVSVRWEKNRILLVTDGArAWsQeGPHRQH 1406 tlslnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin ++ ++ ++l++GGlp ss+ss+l++ + gF GC++++r+ KIAA0533 1407 QGAEHPQPHtLFVGGLPASSHSSKLPV---------TvGFSGCVKRLRLH 1447 ge<-* g+ KIAA0533 1448 GR 1449 PF00054.13.fs: domain 3 of 3, from 1499 to 1626: score 56.9, E = 5.6e-16 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl +R + +Gl++ +G+++ + ++l l+ + ++ ++ d KIAA0533 1499 VRPLAVTGLIF--HLGQARTP--------PYLQLQVTEKQVLLRADD 1535 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG G+g v+r+ + +DG+WH++ ++++g + L Vd + KIAA0533 1536 GAGEFSTSVTRPSVL--CDGQWHRLAVMKSGNVLRLEVDAQSN------- 1576 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC +t+ l+a ++ +Ly+GGlP + +av++++ p++ GC KIAA0533 1577 --HTVGPLLAAAA-----GAPAPLYLGGLP-EPMAVQPWP----PAYCGC 1614 irdviingkpld<-* +r++ +n+ p+ KIAA0533 1615 MRRLAVNRSPVA 1626 PF02210.14.ls: domain 5 of 5, from 1499 to 1623: score 96.9, E = 5.6e-26 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl +R+ + +Gl++++g++++ ++ +l+L++ + ++ lr d KIAA0533 1499 VRP-LAVTGLIFHLGQArT--------PP-YLQLQVTEKQVLLRADD 1535 G.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgss G ++ ++++t ++ l+DGqWH+++v +g+ ++L+VD ++++++++ KIAA0533 1536 GaGEFsTSVTRPsVLCDGQWHRLAVMKSGNVLRLEVDAQsNHtVgPLLAA 1585 dtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin + plylGGlpe +++ + + + GC+r++ +n KIAA0533 1586 ---AAGAPAPLYLGGLPEPMAVQPW-----------PpAYCGCMRRLAVN 1621 ge<-* KIAA0533 1622 RS 1623 PF02210.14.fs: domain 5 of 5, from 1499 to 1623: score 95.1, E = 2.2e-27 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl +R+ + +Gl++++g++++ ++ +l+L++ + ++ lr d KIAA0533 1499 VRP-LAVTGLIFHLGQArT--------PP-YLQLQVTEKQVLLRADD 1535 G.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgss G ++ ++++t ++ l+DGqWH+++v +g+ ++L+VD ++++++++ KIAA0533 1536 GaGEFsTSVTRPsVLCDGQWHRLAVMKSGNVLRLEVDAQsNHtVgPLLAA 1585 dtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvrin + plylGGlpe +++ + + + GC+r++ +n KIAA0533 1586 ---AAGAPAPLYLGGLPEPMAVQPW-----------PpAYCGCMRRLAVN 1621 ge<-* KIAA0533 1622 RS 1623 PF00054.13.ls: domain 2 of 2, from 1499 to 1626: score 58.7, E = 1.7e-14 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl +R + +Gl++ +G+++ + ++l l+ + ++ ++ d KIAA0533 1499 VRPLAVTGLIF--HLGQARTP--------PYLQLQVTEKQVLLRADD 1535 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG G+g v+r+ + +DG+WH++ ++++g + L Vd + KIAA0533 1536 GAGEFSTSVTRPSVL--CDGQWHRLAVMKSGNVLRLEVDAQSN------- 1576 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC +t+ l+a ++ +Ly+GGlP + +av++++ p++ GC KIAA0533 1577 --HTVGPLLAAAA-----GAPAPLYLGGLP-EPMAVQPWP----PAYCGC 1614 irdviingkpld<-* +r++ +n+ p+ KIAA0533 1615 MRRLAVNRSPVA 1626 //