# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg03784.fasta.huge -Q ../query/KIAA0533.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0533, 1645 aa vs ./tmplib.23663 library 1985860 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.2450+/-0.00759; mu= 2.2990+/- 0.510 mean_var=251.9921+/-62.282, 0's: 0 Z-trim: 18 B-trim: 4 in 1/39 Lambda= 0.080794 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1907 ( 1737 res) ah00504 (1737) 339 54.4 2.5e-07 KIAA0818 ( 375 res) hj00220 ( 375) 303 49.4 1.7e-06 KIAA1781 ( 974 res) fg06971(revised) ( 974) 292 48.6 7.7e-06 KIAA0815 ( 1640 res) sh06087 (1640) 290 48.6 1.3e-05 KIAA1780 ( 1192 res) pf01012 (1192) 269 46.0 5.6e-05 KIAA0246 ( 2589 res) ef02679 (2589) 262 45.6 0.00017 KIAA0534 ( 1028 res) hg03820s1 (1028) 229 41.3 0.0013 KIAA1398 ( 1586 res) ha02572 (1586) 228 41.4 0.0019 KIAA0812 ( 1364 res) hg01044 (1364) 224 40.8 0.0023 KIAA1857 ( 549 res) fk03350 ( 549) 203 37.9 0.0069 KIAA0149 ( 830 res) ha01221 ( 830) 206 38.5 0.0072 >>KIAA1907 ( 1737 res) ah00504 (1737 aa) initn: 593 init1: 179 opt: 339 Z-score: 223.4 bits: 54.4 E(): 2.5e-07 Smith-Waterman score: 339; 41.000% identity (65.000% similar) in 100 aa overlap (1-95:419-513) 10 20 30 KIAA05 CDRCQEGHFGFNGCGGCRPCACGPAAEGSE ::::. :. :: .: . :.: : . .. KIAA19 LCGCSPAGTLPEGCDEAGRCLCQPEFAGPHCDRCRPGYHGFPNC---QACTCDPRGALDQ 390 400 410 420 430 440 40 50 60 70 80 KIAA05 CHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQGCRRCQCPG-----GRCDPHTGRCNCPP .: :.:::: : :.::.::. :.: .: :.: . . :::..:.:.: : KIAA19 LCGAGGLCRCRPGYTGTACQECSPGFHGFP--SCVPCHCSAEGSLHAACDPRSGQCSCRP 450 460 470 480 490 500 90 100 110 120 130 140 KIAA05 GLSGERCDTCSQQHQVPVPGGPVGHSIHCEVCDHCVVLLLDDLERAGALLPAIHEQLRGI ..: ::::: KIAA19 RVTGLRCDTCVPGAYNFPYCEAGSCHPAGLAPVDPALPEAQVPCMCRAHVEGPSCDRCKP 510 520 530 540 550 560 >>KIAA0818 ( 375 res) hj00220 (375 aa) initn: 281 init1: 233 opt: 303 Z-score: 208.6 bits: 49.4 E(): 1.7e-06 Smith-Waterman score: 306; 32.624% identity (56.028% similar) in 141 aa overlap (1-120:8-147) 10 20 30 40 50 KIAA05 CDRCQEGHFGFNGCGGCRPCACGP-AAEGSECHPQSGQCHCRPGTMGPQCREC :. :.:: . : :.:: :.: .: . :. .::.:.:. :..: : .: KIAA08 PGYQGLHCETCKEGFYLNYTSGLCQPCDCSPHGALSIPCN-SSGKCQCKVGVIGSICDRC 10 20 30 40 50 60 70 80 90 100 KIAA05 APGYWGLPEQGCRRCQCPG--GRCDPHTGRC-NCPPGLSGERCDTCSQQ-HQVP------ ::.:. ..:: ::: . . :: :: : :: . .:..:. :.. .: : KIAA08 QDGYYGFSKNGCLPCQCNNRSASCDALTGACLNCQENSKGNHCEECKEGFYQSPDATKEC 60 70 80 90 100 110 110 120 130 140 150 KIAA05 --VPGGPVGHSIHCEV--------CDHCVVLLLDDLERAGALLPAIHEQLRGINASSMAW : . : . : . ::.: KIAA08 LRCPCSAVTSTGSCSIKSSELEPECDQCKDGYIGPNCNKCENGYYNFDSICRKCQCHGHV 120 130 140 150 160 170 >>KIAA1781 ( 974 res) fg06971(revised) (974 aa) initn: 267 init1: 180 opt: 292 Z-score: 196.8 bits: 48.6 E(): 7.7e-06 Smith-Waterman score: 292; 41.176% identity (56.303% similar) in 119 aa overlap (4-118:192-295) 10 20 30 KIAA05 CDRCQEGHFGFNGCGGCRPCACGPAAEGSECHP : : :: : : :: .:..: KIAA17 CPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDC-PCH-----HGGQCDH 170 180 190 200 210 40 50 60 70 80 90 KIAA05 QSGQCHCRPGTMGPQCRE-CAPGYWGLPEQGCRRCQCP-GGRCDPHTGRCNCPPGLSGER .::::: : :: .:.: : : .:. : .::.: ::.:.: :: :.: :: .: : KIAA17 VTGQCHCTAGYMGDRCQEECPFGSFGF--QCSQRCDCHNGGQCSPTTGACECEPGYKGPR 220 230 240 250 260 270 100 110 120 130 140 KIAA05 CDTCSQQHQVPVPG--GPVGHSIHCEVCDHCVVLLLDDLERAGALLPAIHEQLRGINASS : :.. : : :: : .. : :: KIAA17 C----QERLCP-EGLHGP-GCTLPCP-CDADNTISCHPVTGACTCQPGWSGHHCNESCPV 280 290 300 310 320 >>KIAA0815 ( 1640 res) sh06087 (1640 aa) initn: 308 init1: 215 opt: 290 Z-score: 192.8 bits: 48.6 E(): 1.3e-05 Smith-Waterman score: 308; 36.527% identity (49.701% similar) in 167 aa overlap (1-147:1449-1601) 10 20 KIAA05 CDR-CQEGHFGFNGCGGCRPCACGPAAEGS :.. : : : :: : : : .:. KIAA08 CHLECSCHNNSTCEPATGTCRCGPGFYGQACEHPCPPGFHG-AGCQGL--CWC---QHGA 1420 1430 1440 1450 1460 1470 30 40 50 60 70 80 KIAA05 ECHPQSGQCHCRPGTMGPQC-RECAPGYWGLPEQGC-RRCQCPGGR-CDPHTGRCNCPPG : : ::.: : : : : : : :: .: .:: .::.: :: ::: :: : :::: KIAA08 PCDPISGRCLCPAGFHGHFCERGCEPGSFG---EGCHQRCDCDGGAPCDPVTGLCLCPPG 1480 1490 1500 1510 1520 90 100 110 120 130 KIAA05 LSGERCDTCSQQHQVPVPGGPVGHSIHCEV-----CD------HCVVLLLDDLERAGALL :: :. .. : :: . ..::. :: ::: . : :. : KIAA08 RSGATCNLDCRRGQF----GP-SCTLHCDCGGGADCDPVSGQCHCVDGYMGPTCREGGPL 1530 1540 1550 1560 1570 1580 140 150 160 170 180 190 KIAA05 -----PAIHEQLRGINASSMAWARLHRLNASIADLQSQLRSPLGPRHETAQQLEVLEQQS :.. . : : .: KIAA08 RLPENPSLAQGLSGHTARLQQTHIPERWTSEALVEAVPWSPPLQSQPEGTLAFGDH 1590 1600 1610 1620 1630 1640 >>KIAA1780 ( 1192 res) pf01012 (1192 aa) initn: 273 init1: 184 opt: 269 Z-score: 181.2 bits: 46.0 E(): 5.6e-05 Smith-Waterman score: 285; 39.474% identity (58.772% similar) in 114 aa overlap (4-114:407-504) 10 20 30 KIAA05 CDRCQEGHFGFNGCGGCRPCACGPAAEGSECHP : :: .:.. : . : : : ::: KIAA17 QCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIK-CD--KRCPCHLENTHS-CHP 380 390 400 410 420 430 40 50 60 70 80 90 KIAA05 QSGQCHCRPGTMGPQCRE-CAPGYWGLPEQGCRR-CQCPGGR-CDPHTGRCNCPPGLSGE .::.: :.:: : : : :.::..: ..:.. :.: .: :: ::.:.: ::..: KIAA17 MSGECACKPGWSGLYCNETCSPGFYG---EACQQICSCQNGADCDSVTGKCTCAPGFKGI 440 450 460 470 480 100 110 120 130 140 150 KIAA05 RCDTCSQQHQVPVPGGPVGHSIHCEVCDHCVVLLLDDLERAGALLPAIHEQLRGINASSM :.: : : : : :.: KIAA17 DCST-------PCPLGTYG--INCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPS 490 500 510 520 530 540 >>KIAA0246 ( 2589 res) ef02679 (2589 aa) initn: 164 init1: 131 opt: 262 Z-score: 172.8 bits: 45.6 E(): 0.00017 Smith-Waterman score: 262; 35.433% identity (51.181% similar) in 127 aa overlap (4-120:1978-2095) 10 20 30 KIAA05 CDRCQEGHFGFNGCGGCRPCACGPAAEGSE--- : ::.: . :. : ::.. :. KIAA02 VWVHPSLWGRPQGLGRGCHRNCVTTTWKPSCCPGHYGSE----CQACPGGPSSPCSDRGV 1950 1960 1970 1980 1990 2000 40 50 60 70 80 KIAA05 CHPQ---SGQCHCRPGTMGPQCRECAPGYWGLPEQGCRRCQCP-GGRCDPH---TGRCNC : :::: :: : : :. :::: .: :. :. :.: :::: .: : : KIAA02 CMDGMSGSGQCLCRSGFAGTACELCAPGAFG-PH--CQACRCTVHGRCDEGLGGSGSCFC 2010 2020 2030 2040 2050 2060 90 100 110 120 130 140 KIAA05 PPGLSGERCDTCSQQHQVPVPGGPVGHSIHCEVCDHCVVLLLDDLERAGALLPAIHEQLR : .: ::.. : . :: : . :.. . : KIAA02 DEGWTGPRCEV--QLELQPVCTPPCAPEAVCRAGNSCECSLGYEGDGRVCTVADLCQDGH 2070 2080 2090 2100 2110 150 160 170 180 190 200 KIAA05 GINASSMAWARLHRLNASIADLQSQLRSPLGPRHETAQQLEVLEQQSTSLGQDARRLGGQ KIAA02 GGCSEHANCSQVGTMVTCTCLPDYEGDGWSCRARNPCTDGHRGGCSEHANCLSTGLNTRR 2120 2130 2140 2150 2160 2170 >>KIAA0534 ( 1028 res) hg03820s1 (1028 aa) initn: 111 init1: 84 opt: 229 Z-score: 156.8 bits: 41.3 E(): 0.0013 Smith-Waterman score: 229; 29.197% identity (56.934% similar) in 137 aa overlap (1-130:647-775) 10 20 30 KIAA05 CDRCQEGHFGFNGCGGCRPCACGPAAEGSE : . .. ...: : .:. :. : KIAA05 GRGHCIEGSSRGPMKLIGMHHNEMVLDTNLCPKEKNYEWSFIQCPACQ---CNGH---ST 620 630 640 650 660 670 40 50 60 70 80 KIAA05 CHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQG--CRRCQCPGGR--CDPHTGRCNCPP- : .. .:. : : ::..: :::.: : .: : : : : : :::.: : KIAA05 CINNNVCEQCKNLTTGKQCQDCMPGYYGDPTNGGQCTACTCSGHANICHLHTGKCFCTTK 680 690 700 710 720 730 90 100 110 120 130 140 KIAA05 GLSGERCDTCSQQHQVPVPGGPV-GHSIHCEVCDHCVVL-LLDDLERAGALLPAIHEQLR :..:..:. :..... :.:. : . . :. .. ::.. .: KIAA05 GIKGDQCQLCDSENRY--VGNPLRGTCYYSLLIDYQFTFSLLQEDDRHHTAINFIANPEQ 740 750 760 770 780 150 160 170 180 190 200 KIAA05 GINASSMAWARLHRLNASIADLQSQLRSPLGPRHETAQQLEVLEQQSTSLGQDARRLGGQ KIAA05 SNKNLDISINASNNFNLNITWSVGSTAGTISGEETSIVSKNNIKEYRDSFSYEKFNFRSN 790 800 810 820 830 840 >>KIAA1398 ( 1586 res) ha02572 (1586 aa) initn: 150 init1: 80 opt: 228 Z-score: 153.9 bits: 41.4 E(): 0.0019 Smith-Waterman score: 232; 19.549% identity (53.947% similar) in 532 aa overlap (242-763:829-1339) 220 230 240 250 260 270 KIAA05 SQLLAGTEATLGHAKTLLAAIRAVDRTLSELMSQTGHLGLANASAPSGEQLLRTLAEVER :.: .: . . .. : ..: : . . KIAA13 APAKKKSGSKKKGEPGPPDADGPLYLPYKTLVSTVGSMVFNEGEAQRLIEILSEKAGIIQ 800 810 820 830 840 850 280 290 300 310 320 KIAA05 LLWEMRARDLGAPQAAAEAELAAAQRLLARVQEQL----SSLWEENQALATQTRDRLAQH :. .: . : : : . .: ..::: ::. :.: : :. .:.. :. KIAA13 DTWH-KATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEK----AKA 860 870 880 890 900 910 330 340 350 360 370 380 KIAA05 EAGLMDLREALNRAVDATREAQELNSRNQERLEEALQRKQELSRDNATLQATLHAARDTL :: ... : : .: ...: : .: ... :.:. ::: :. . .: KIAA13 AAGEAKVKKQL---VAREQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNT- 920 930 940 950 960 390 400 410 420 430 440 KIAA05 ASVFRLLHSLDQAKEELERLAASLDGARTPLLQRMQTFSPAGSKLRLVEAAEAHAQQLGQ .. :: . . .. :.. ...... .. : ... :: .::: .:: :. : KIAA13 -QLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSK-ELVEKSEAVRQDEQQ 970 980 990 1000 1010 1020 450 460 470 480 490 500 KIAA05 LALNLSSIILDVNQDRLTQRAIEASNAYSRILQAVQAAEDAAGQALQQADHTWATVVRQG :... . ..... . .. . .:.: : ... : ... . :.. .. KIAA13 RK------ALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASL--RA 1030 1040 1050 1060 1070 510 520 530 540 550 560 KIAA05 LVDRAQQLLANSTALEEAMLQEQQRLGLVWAALQGARTQLRDVRAKKDQLEAHIQAAQAM ...::. . . :. . . . .. :.: . ::...::...:: .:.. .:. KIAA13 DAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEAL 1080 1090 1100 1110 1120 1130 570 580 590 600 610 620 KIAA05 LAMDTDETSKKIAHAKAVAAEAQDTATRVQSQLQAMQ-ENVE-RWQGQYEGLRGQDLGQA : . .. . ..: : . : ...::..... : .: : . . ....:: . KIAA13 LEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREK 1140 1150 1160 1170 1180 1190 630 640 650 660 670 680 KIAA05 VLDAGHSVSTLEKTLPQLLAKLSILENRGVHNASL----ALSASIGRVRELIAQARGAAS : ....: :.. . : .:. .... .. : .. : .. . :: . :. . KIAA13 NWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYT 1200 1210 1220 1230 1240 1250 690 700 710 720 730 740 KIAA05 KVKVPMKFNGRSGVQLRTPRDLADLAAYTALKFYLQGPEPEPGQGTEDRFVMYMGSRQAT . .: .: . :. : :. .. : :. :. :.. .. .. KIAA13 EWLQDLKEKGPT--LLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGM 1260 1270 1280 1290 1300 1310 750 760 770 780 790 800 KIAA05 GDYMGVSLRDKKVHWVYQLGEAGPAVLSIDEDIGEQFAAVSLDRTLQFGHMSVTVERQMI . :..... : ..: : KIAA13 LRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHL 1320 1330 1340 1350 1360 1370 >>KIAA0812 ( 1364 res) hg01044 (1364 aa) initn: 300 init1: 150 opt: 224 Z-score: 152.2 bits: 40.8 E(): 0.0023 Smith-Waterman score: 228; 36.893% identity (52.427% similar) in 103 aa overlap (1-91:106-207) 10 20 30 KIAA05 CDRCQEGHFGFNGCGGCRPCACGPAAEGSE : .:.: :. : .: :: : :.. :. KIAA08 RGWWGSPTCGPCNCDVHKGFDPNCNKTNGQC-HCKEFHYRPRGSDSCLPCDCYPVGSTSR 80 90 100 110 120 130 40 50 60 70 KIAA05 -CHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQGCRRCQ--CP----GGRCDPHT----- : :.:::: ::::..: :: : . . .::: :: .: :.: KIAA08 SCAPHSGQCPCRPGALGRQCNSCDSPFAEVTASGCRVLYDACPKSLRSGVWWPQTKFGVL 140 150 160 170 180 190 80 90 100 110 120 130 KIAA05 GRCNCPPGLSGERCDTCSQQHQVPVPGGPVGHSIHCEVCDHCVVLLLDDLERAGALLPAI . :: : : : KIAA08 ATVPCPRGALGLRGAGAAVRLCDEAQGWLEPDLFNCTSPAFRELSLLLDGLELNKTALDT 200 210 220 230 240 250 >>KIAA1857 ( 549 res) fk03350 (549 aa) initn: 75 init1: 75 opt: 203 Z-score: 143.7 bits: 37.9 E(): 0.0069 Smith-Waterman score: 215; 32.407% identity (50.000% similar) in 108 aa overlap (1-93:404-506) 10 20 KIAA05 CDRCQEGHFGFNGCGG------CRPCACGP :..:. :.. :: . : : :. KIAA18 CYGHSNRCSYIDFLNVVTCVSCKHNTRGQHCQHCRLGYYR-NGSAELDDENVCIECNCNQ 380 390 400 410 420 430 30 40 50 60 70 KIAA05 AAEGSECHPQSGQCHCRPGTMGPQCRECAPG-YWGLPEQGCRRCQCP--------GGRCD . . ..: :.:: :. ::.: .: : :: .::: : :: : KIAA18 IGSVHDRCNETGFCECREGAAGPKCDDCLPTHYW---RQGCYPNVCDDDQLLCQNGGTCL 440 450 460 470 480 80 90 100 110 120 130 KIAA05 PHTGRCNCPPGLSGERCDTCSQQHQVPVPGGPVGHSIHCEVCDHCVVLLLDDLERAGALL . :: :: : .: ::. KIAA18 QNQ-RCACPRGYTGVRCEQPRCDPADDDGGLDCDRAPGAAPRPATLLGCLLLLGLAARLG 490 500 510 520 530 540 1645 residues in 1 query sequences 1985860 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:55 2008 done: Thu Dec 18 15:05:57 2008 Total Scan time: 0.890 Total Display time: 0.420 Function used was FASTA [version 34.26.5 April 26, 2007]