hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05370824/chunk_1/iprscan-20080502-05370824.nocrc
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Query sequence: KIAA0530
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 147.6    1.3e-39   8

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/8     215   235 ..     1    23 []     1.3  2.2e+02
SM00355      2/8     742   767 ..     1    23 []    22.7    0.051
SM00355      3/8     787   812 ..     1    23 []    22.6    0.055
SM00355      4/8     954   979 ..     1    23 []    19.2     0.56
SM00355      5/8    1012  1037 ..     1    23 []    20.8      0.2
SM00355      6/8    1056  1081 ..     1    23 []    16.3      4.3
SM00355      7/8    1096  1121 ..     1    23 []    24.6    0.014
SM00355      8/8    1226  1250 ..     1    23 []    20.0     0.33

Alignments of top-scoring domains:
SM00355: domain 1 of 8, from 215 to 235: score 1.3, E = 2.2e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C + f+++++L  H+      
    KIAA0530   215    FICSR-CYRAFTNPrSLGGHLS--    235  

SM00355: domain 2 of 8, from 742 to 767: score 22.7, E = 0.051
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ++C+ +gC++s  +k+aL +H+ ++H   
    KIAA0530   742    FVCQNqGCNYSAMTKdALFKHYGkIH    767  

SM00355: domain 3 of 8, from 787 to 812: score 22.6, E = 0.055
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      +kC ++ C k+f++ ++L+ H + vH   
    KIAA0530   787    FKCVVpTCTKTFTRNsNLRAHCQlVH    812  

SM00355: domain 4 of 8, from 954 to 979: score 19.2, E = 0.56
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      y+C ++gC   f+ +++L+ H++ vH   
    KIAA0530   954    YRCVHqGCFAAFTIQqNLILHYQaVH    979  

SM00355: domain 5 of 8, from 1012 to 1037: score 20.8, E = 0.2
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ++C++++C++ f   + L++H+++ H   
    KIAA0530  1012    FRCQVsDCSRIFQAItGLIQHYMkLH    1037 

SM00355: domain 6 of 8, from 1056 to 1081: score 16.3, E = 4.3
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      + C++  C+ sf+++ +++ H+   H   
    KIAA0530  1056    FPCDQlECKSSFTTYlNYVVHLEaDH    1081 

SM00355: domain 7 of 8, from 1096 to 1121: score 24.6, E = 0.014
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ykC+ +gC++ + ++++L rH+ ++H   
    KIAA0530  1096    YKCDCeGCDRIYATRsNLLRHIFnKH    1121 

SM00355: domain 8 of 8, from 1226 to 1250: score 20.0, E = 0.33
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y C i+gC  + +s+++ +rH++ H   
    KIAA0530  1226    YPCMIkGCTSVVTSEsNIIRHYKCH    1250 

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