hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05370824/chunk_1/iprscan-20080502-05370824.nocrc
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Query sequence: KIAA0530
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         123.4    5.8e-34   8
PF00096.16.fs Zinc finger, C2H2 type                         107.4    3.8e-29   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   3/8     787   812 ..     1    24 []    26.1    3e-05
PF00096.16.ls   3/8     787   812 ..     1    24 []    28.1  2.9e-05
PF00096.16.ls   7/8    1096  1121 ..     1    24 []    23.0    0.001

Alignments of top-scoring domains:
PF00096.16.fs: domain 3 of 8, from 787 to 812: score 26.1, E = 3e-05
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      +kC ++ C k+F+r+snL++H +  H   
    KIAA0530   787    FKCVVpTCTKTFTRNSNLRAHCQLvH    812  

PF00096.16.ls: domain 3 of 8, from 787 to 812: score 28.1, E = 2.9e-05
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      +kC ++ C k+F+r+snL++H +  H   
    KIAA0530   787    FKCVVpTCTKTFTRNSNLRAHCQLvH    812  

PF00096.16.ls: domain 7 of 8, from 1096 to 1121: score 23.0, E = 0.001
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ykC+ ++C++ + ++snL rH+  +H   
    KIAA0530  1096    YKCDCeGCDRIYATRSNLLRHIFNkH    1121 

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