hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05352643/chunk_1/iprscan-20080502-05352643.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0529 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 435.8 1.2e-139 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 437.6 1.6e-128 1 PF06337.3.ls Domain of Unknown Function (DUF1055) 318.0 1.5e-92 1 PF06337.3.fs Domain of Unknown Function (DUF1055) 316.0 6.2e-92 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06337.3.fs 1/1 78 223 .. 1 147 [] 316.0 6.2e-92 PF06337.3.ls 1/1 78 223 .. 1 147 [] 318.0 1.5e-92 PF00443.19.fs 1/1 257 901 .. 1 318 [] 435.8 1.2e-139 PF00443.19.ls 1/1 257 901 .. 1 318 [] 437.6 1.6e-128 Alignments of top-scoring domains: PF06337.3.fs: domain 1 of 1, from 78 to 223: score 316.0, E = 6.2e-92 *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq +Lke+Li+++DY+L+P+E+W+kLvsWY+l+eG++pi+RKV+eqG+++ KIAA0529 78 SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFV 124 ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe k+++VEVY++eLkL+++ ++++++T+R+SK+d+I+++++e++++fs+++e KIAA0529 125 KHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 174 ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq ketR+W++y+++++e+L+++d +T++dAgL+++Q+++iE++++DGtw+++ KIAA0529 175 KETRLWNKYMSNTFEPLNKPD-STIQDAGLYQGQVLVIEQKNEDGTWPRG 223 <-* KIAA0529 - - PF06337.3.ls: domain 1 of 1, from 78 to 223: score 318.0, E = 1.5e-92 *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq +Lke+Li+++DY+L+P+E+W+kLvsWY+l+eG++pi+RKV+eqG+++ KIAA0529 78 SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFV 124 ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe k+++VEVY++eLkL+++ ++++++T+R+SK+d+I+++++e++++fs+++e KIAA0529 125 KHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 174 ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq ketR+W++y+++++e+L+++d +T++dAgL+++Q+++iE++++DGtw+++ KIAA0529 175 KETRLWNKYMSNTFEPLNKPD-STIQDAGLYQGQVLVIEQKNEDGTWPRG 223 <-* KIAA0529 - - PF00443.19.fs: domain 1 of 1, from 257 to 901: score 435.8, E = 1.2e-139 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl pg++GL NlGNTC+mNS++QcL+++ppl++yfl+d+y+ e+n +npl KIAA0529 257 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPL 303 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g+ g++++++a L+++++sg+ ++v+p+ fk+++g+++++fsgy KIAA0529 304 GMRGEIAKSYAELIKQMWSGkFSYVTPRA------FKTQVGRFAPQFSGY 347 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh +QQD++E+l+fLLdgLhedlnr+ kkpy+ +++d+rpd+ +a+eaw+nh KIAA0529 348 QQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDkVVAeEAWENH 397 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ l+rn+sii+d+F+G +ks+ ++++ + + + ++ + + + + +++++ KIAA0529 398 LKRNDSIIVDIFHGLFKStlvcpecakisvtfdpfcyltlplpmkkertl 447 RF .................................................. + + ++ +++ + + ++ ++ + ++ + ++ + ++ ++ KIAA0529 448 evylvrmdpltkpmqykvvvpkignildlctalsalsgipadkmivtdiy 497 RF .................................................. +++ ++ +++ ++ ++++ + + ++++++++ + + +++ + KIAA0529 498 nhrfhrifamdenlssimerddiyvfeininrtedtehviipvclrekfr 547 RF .................................................. +++ +++++++ +++ ++++++++ + + ++ + ++++++ KIAA0529 548 hssythhtgsslfgqpflmavprnntedklynllllrmcryvkistetee 597 RF .................................................. ++++ +++++++ +++++++ ++++++++ ++++++++++++++ +++++ KIAA0529 598 tegslhcckdqningngpngiheegspsemetdepddessqdqelpsene 647 RF .................................................. +++++++ +++++++++ +++++++++ ++++++ + + ++ ++++ + KIAA0529 648 nsqsedsvggdndsenglctedtckgqltghkkrlftfqfnnlgntdiny 697 RF .................................................. ++++++ + ++++ + ++++ + +++ +++ +++ ++ +++++ KIAA0529 698 ikddtrhirfddrqlrldersflaldwdpdlkkryfdenaaedfekhesv 747 RF xxxxxx ............................................klkikr + ++++++ + +++ + +++++ + +++ +++++++++ ++kl++++ KIAA0529 748 eykppkkpfvklkdcielfttkeklgaedpwycpnckehqqatkKLDLWS 797 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LPpvLiihLKRFsyngetglnkKiddkVefPleLdlssycnaelkekevl LPpvL++hLKRFsy++ ++ K+d+ V+fP+ ++++s+++ ++ KIAA0529 798 LPPVLVVHLKRFSYSRY--MRDKLDTLVDFPINDLDMSEFLINP------ 839 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rkdekieklkeerqrdedgnneeepeeeedneegenpptkYeLyaVvvHs +++p++Y+L+aV++H+ KIAA0529 840 ----------------------------------NAGPCRYNLIAVSNHY 855 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GsslssGHYiayikkkkengkWykfDDekVsevteeevlersssAYiLFY G ++++GHY+a++k +k++gkWy+fDD++Vs ++e+++ +s++AY+LFY KIAA0529 856 G-GMGGGHYTAFAK-NKDDGKWYYFDDSSVSTASEDQI--VSKAAYVLFY 901 RF <-* KIAA0529 - - PF00443.19.ls: domain 1 of 1, from 257 to 901: score 437.6, E = 1.6e-128 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl pg++GL NlGNTC+mNS++QcL+++ppl++yfl+d+y+ e+n +npl KIAA0529 257 PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPL 303 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g+ g++++++a L+++++sg+ ++v+p+ fk+++g+++++fsgy KIAA0529 304 GMRGEIAKSYAELIKQMWSGkFSYVTPRA------FKTQVGRFAPQFSGY 347 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh +QQD++E+l+fLLdgLhedlnr+ kkpy+ +++d+rpd+ +a+eaw+nh KIAA0529 348 QQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDkVVAeEAWENH 397 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ l+rn+sii+d+F+G +ks+ ++++ + + + ++ + + + + +++++ KIAA0529 398 LKRNDSIIVDIFHGLFKStlvcpecakisvtfdpfcyltlplpmkkertl 447 RF .................................................. + + ++ +++ + + ++ ++ + ++ + ++ + ++ ++ KIAA0529 448 evylvrmdpltkpmqykvvvpkignildlctalsalsgipadkmivtdiy 497 RF .................................................. +++ ++ +++ ++ ++++ + + ++++++++ + + +++ + KIAA0529 498 nhrfhrifamdenlssimerddiyvfeininrtedtehviipvclrekfr 547 RF .................................................. +++ +++++++ +++ ++++++++ + + ++ + ++++++ KIAA0529 548 hssythhtgsslfgqpflmavprnntedklynllllrmcryvkistetee 597 RF .................................................. ++++ +++++++ +++++++ ++++++++ ++++++++++++++ +++++ KIAA0529 598 tegslhcckdqningngpngiheegspsemetdepddessqdqelpsene 647 RF .................................................. +++++++ +++++++++ +++++++++ ++++++ + + ++ ++++ + KIAA0529 648 nsqsedsvggdndsenglctedtckgqltghkkrlftfqfnnlgntdiny 697 RF .................................................. ++++++ + ++++ + ++++ + +++ +++ +++ ++ +++++ KIAA0529 698 ikddtrhirfddrqlrldersflaldwdpdlkkryfdenaaedfekhesv 747 RF xxxxxx ............................................klkikr + ++++++ + +++ + +++++ + +++ +++++++++ ++kl++++ KIAA0529 748 eykppkkpfvklkdcielfttkeklgaedpwycpnckehqqatkKLDLWS 797 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LPpvLiihLKRFsyngetglnkKiddkVefPleLdlssycnaelkekevl LPpvL++hLKRFsy++ ++ K+d+ V+fP+ ++++s+++ ++ KIAA0529 798 LPPVLVVHLKRFSYSRY--MRDKLDTLVDFPINDLDMSEFLINP------ 839 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rkdekieklkeerqrdedgnneeepeeeedneegenpptkYeLyaVvvHs +++p++Y+L+aV++H+ KIAA0529 840 ----------------------------------NAGPCRYNLIAVSNHY 855 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GsslssGHYiayikkkkengkWykfDDekVsevteeevlersssAYiLFY G ++++GHY+a++k +k++gkWy+fDD++Vs ++e+++ +s++AY+LFY KIAA0529 856 G-GMGGGHYTAFAK-NKDDGKWYYFDDSSVSTASEDQI--VSKAAYVLFY 901 RF <-* KIAA0529 - - //