hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05321069/chunk_1/iprscan-20080502-05321069.nocrc
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Query sequence: KIAA0527
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00193.8.ls Extracellular link domain                      -21.7     0.0026   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00193.8.ls   1/1     177   272 ..     1   104 []   -21.7   0.0026

Alignments of top-scoring domains:
PF00193.8.ls: domain 1 of 1, from 177 to 272: score -21.7, E = 0.0026
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkg.Gfd
                      G +F +++  g   l  e A+  C+ +gA +A+ ++L    ++  f 
    KIAA0527   177    GKLFVLESQNGSQGLQLEAARLSCKSRGAHLASADELRRVVQDcSFA 223  

                   qCdAGWLADgsVRYPIvkPRenCgGdk..dgfpGVRtyYlfpNQTGfpdd
                   +C  GWLADg+++   ++  +  +G  + +    VR+          p  
    KIAA0527   224 VCTTGWLADGTLG---TTVCSKGSGEQqiMRAVDVRIE-------SNP-V 262  

                   pssrYDvYCF<-*
                   p  +Y + C    
    KIAA0527   263 PGGTYSALCI    272  

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