hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05303338/chunk_1/iprscan-20080502-05303338.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0526 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00155.11.ls Aminotransferase class I and II 223.8 3.5e-64 1 PF00155.11.fs Aminotransferase class I and II 221.9 1.3e-63 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00155.11.fs 1/1 215 575 .. 1 413 [] 221.9 1.3e-63 PF00155.11.ls 1/1 215 575 .. 1 413 [] 223.8 3.5e-64 Alignments of top-scoring domains: PF00155.11.fs: domain 1 of 1, from 215 to 575: score 221.9, E = 1.3e-63 *->kdkinLgsneylgdagkpptlpavakAekeayGcteGalaggtlnlY k +in+gs +ylg+a++++ ++++a + e yG a+ ++t+ + KIAA0526 215 KGVINMGSYNYLGFARNTGSCQEAAAKVLEEYG----AGVCSTRQEI 257 gptdGlpelrealAkflggarspvlklkreaavvfssGagaliealifll g+ d + el+e +A+flg +eaa +++G+ + +++l KIAA0526 258 GNLDKHEELEELVARFLG----------VEAAMAYGMGFATNSMNIPALV 297 rlnpgdailvpaPtyasyirifrlaggevvryplyssndfhlDfdaLeaa + +g+ il++++++as ++rl+g++++ ++ h++++ Le++ KIAA0526 298 G--KGCLILSDELNHASLVLGARLSGATIRIFK-------HNNMQSLEKL 338 lkeapegni.......ktKvvlhtsPhNPtGtvltleelekladlakehn lk+a ++++++++ k ++l+++ +++ G++ l+e+ +l +k+++ KIAA0526 339 LKDAIVYGQprtrrpwKKILILVEGIYSMEGSIVRLPEVIAL---KKKYK 385 illlvDEAYagfvfGsldedavsvgrGiaEralleegpnngkdlllvvgs ++l+ DEA++ ++ G ++grG++E+++l++++ ++ +g+ KIAA0526 386 AYLYLDEAHSIGALG-------PTGRGVVEYFGLDPEDV-----DVMMGT 423 fSKafGlaGlRvGyilgynadaesaavisqlrklarpfysnPsthgqaaa f K+fG+ G Gyi g ++i++lr +++ ++ +++ ++++ KIAA0526 424 FTKSFGASG---GYIGG-KK-----ELIDYLR-THSHSAVYATSLSPPVV 463 aaaL..sdsllvasWekeleemrqrikerrdyLrdgLeaikglpgglsvl +++++ + + ++++ ++e +q+++e+ +y+r L++ g++ + KIAA0526 464 EQIItsMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEM-----GFIIY 508 psq.agfflltgldpelkepfesakelaqvdrLleevgvyvtpgsspgvP +++++++++l++ p+ + ++ + +l++ ++ v+ p +P KIAA0526 509 GNEdSPVVPLMLYMPA------KIGAFGRE--MLKR-NIGVVVVGFPATP 549 kgpgwlRitvtAggteeeleelleai<-* + +++ R++++A++t+e l+ +l+ i KIAA0526 550 IIESRARFCLSAAHTKEILDTALKEI 575 PF00155.11.ls: domain 1 of 1, from 215 to 575: score 223.8, E = 3.5e-64 *->kdkinLgsneylgdagkpptlpavakAekeayGcteGalaggtlnlY k +in+gs +ylg+a++++ ++++a + e yG a+ ++t+ + KIAA0526 215 KGVINMGSYNYLGFARNTGSCQEAAAKVLEEYG----AGVCSTRQEI 257 gptdGlpelrealAkflggarspvlklkreaavvfssGagaliealifll g+ d + el+e +A+flg +eaa +++G+ + +++l KIAA0526 258 GNLDKHEELEELVARFLG----------VEAAMAYGMGFATNSMNIPALV 297 rlnpgdailvpaPtyasyirifrlaggevvryplyssndfhlDfdaLeaa + +g+ il++++++as ++rl+g++++ ++ h++++ Le++ KIAA0526 298 G--KGCLILSDELNHASLVLGARLSGATIRIFK-------HNNMQSLEKL 338 lkeapegni.......ktKvvlhtsPhNPtGtvltleelekladlakehn lk+a ++++++++ k ++l+++ +++ G++ l+e+ +l +k+++ KIAA0526 339 LKDAIVYGQprtrrpwKKILILVEGIYSMEGSIVRLPEVIAL---KKKYK 385 illlvDEAYagfvfGsldedavsvgrGiaEralleegpnngkdlllvvgs ++l+ DEA++ ++ G ++grG++E+++l++++ ++ +g+ KIAA0526 386 AYLYLDEAHSIGALG-------PTGRGVVEYFGLDPEDV-----DVMMGT 423 fSKafGlaGlRvGyilgynadaesaavisqlrklarpfysnPsthgqaaa f K+fG+ G Gyi g ++i++lr +++ ++ +++ ++++ KIAA0526 424 FTKSFGASG---GYIGG-KK-----ELIDYLR-THSHSAVYATSLSPPVV 463 aaaL..sdsllvasWekeleemrqrikerrdyLrdgLeaikglpgglsvl +++++ + + ++++ ++e +q+++e+ +y+r L++ g++ + KIAA0526 464 EQIItsMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEM-----GFIIY 508 psq.agfflltgldpelkepfesakelaqvdrLleevgvyvtpgsspgvP +++++++++l++ p+ + ++ + +l++ ++ v+ p +P KIAA0526 509 GNEdSPVVPLMLYMPA------KIGAFGRE--MLKR-NIGVVVVGFPATP 549 kgpgwlRitvtAggteeeleelleai<-* + +++ R++++A++t+e l+ +l+ i KIAA0526 550 IIESRARFCLSAAHTKEILDTALKEI 575 //