hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05271960/chunk_1/iprscan-20080502-05271960.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0524 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07647.7.fs SAM domain (Sterile alpha motif) 123.3 1.6e-35 2 PF07647.7.ls SAM domain (Sterile alpha motif) 127.2 4.1e-35 2 PF00536.20.fs SAM domain (Sterile alpha motif) 61.3 2e-17 2 PF00536.20.ls SAM domain (Sterile alpha motif) 65.3 1.9e-16 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.ls 1/2 283 350 .. 1 72 [] 68.2 2.5e-17 PF07647.7.fs 1/2 283 350 .. 1 72 [] 66.2 9.2e-19 PF00536.20.fs 1/2 284 348 .. 1 65 [] 52.6 7.6e-15 PF00536.20.ls 1/2 284 348 .. 1 65 [] 54.5 3.2e-13 PF07647.7.fs 2/2 353 422 .. 1 72 [] 57.1 4.3e-16 PF07647.7.ls 2/2 353 422 .. 1 72 [] 59.1 1.4e-14 Alignments of top-scoring domains: PF07647.7.ls: domain 1 of 2, from 283 to 350: score 68.2, E = 2.5e-17 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+sw +v+ WL++ig+ +Y+++F++q+++g +ll lrltee+L KIAA0524 283 VPSWKEAEVQTWLQQIGF-SKYCESFREQQVDG-DLL-LRLTEEEL- 325 klalGitsvghRkkilkkiqelkqq<-* +++lG+ s + Rk+ +++ elk++ KIAA0524 326 QTDLGMKSGITRKRFFRELTELKTF 350 PF07647.7.fs: domain 1 of 2, from 283 to 350: score 66.2, E = 9.2e-19 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+sw +v+ WL++ig+ +Y+++F++q+++g +ll lrltee+L KIAA0524 283 VPSWKEAEVQTWLQQIGF-SKYCESFREQQVDG-DLL-LRLTEEEL- 325 klalGitsvghRkkilkkiqelkqq<-* +++lG+ s + Rk+ +++ elk++ KIAA0524 326 QTDLGMKSGITRKRFFRELTELKTF 350 PF00536.20.fs: domain 1 of 2, from 284 to 348: score 52.6, E = 7.6e-15 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l + w +V+ WL+ ig ++Y+++F + + +dgd ll+ltee+L+ +l KIAA0524 284 PSWKEAEVQTWLQQIGFSKYCESF-REQQVDGDLLLRLTEEELQTdL 329 GvtllGHrkKIlssIqgLk<-* G+++ rk+ + + Lk KIAA0524 330 GMKSGITRKRFFRELTELK 348 PF00536.20.ls: domain 1 of 2, from 284 to 348: score 54.5, E = 3.2e-13 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l + w +V+ WL+ ig ++Y+++F + + +dgd ll+ltee+L+ +l KIAA0524 284 PSWKEAEVQTWLQQIGFSKYCESF-REQQVDGDLLLRLTEEELQTdL 329 GvtllGHrkKIlssIqgLk<-* G+++ rk+ + + Lk KIAA0524 330 GMKSGITRKRFFRELTELK 348 PF07647.7.fs: domain 2 of 2, from 353 to 422: score 57.1, E = 4.3e-16 *->veswslesvaeWLesi..glegqYkdnFsdqgitglellllrlteed +++++ +++a+WL s+++++ +qY++ + ++g++ +ll +r++e++ KIAA0524 353 YSTCDRSNLADWLGSLdpRF-RQYTYGLVSCGLDR-SLL-HRVSEQQ 396 LaklalGitsvghRkkilkkiqelkqq<-* L ++++Gi++ hR +il+++ e++++ KIAA0524 397 L-LEDCGIHLGVHRARILTAAREMLHS 422 PF07647.7.ls: domain 2 of 2, from 353 to 422: score 59.1, E = 1.4e-14 *->veswslesvaeWLesi..glegqYkdnFsdqgitglellllrlteed +++++ +++a+WL s+++++ +qY++ + ++g++ +ll +r++e++ KIAA0524 353 YSTCDRSNLADWLGSLdpRF-RQYTYGLVSCGLDR-SLL-HRVSEQQ 396 LaklalGitsvghRkkilkkiqelkqq<-* L ++++Gi++ hR +il+++ e++++ KIAA0524 397 L-LEDCGIHLGVHRARILTAAREMLHS 422 //