# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01923.fasta.huge -Q ../query/KIAA0524.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0524, 598 aa
 vs ./tmplib.23663 library

1986907 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0307+/-0.00443; mu= 12.4663+/- 0.301
 mean_var=70.4113+/-17.219, 0's: 0 Z-trim: 5  B-trim: 93 in 1/39
 Lambda= 0.152846

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1230  ( 932 res)   fh06860s1                   ( 932)  169 46.9 8.9e-06


>>KIAA1230  ( 932 res)   fh06860s1                        (932 aa)
 initn: 172 init1: 121 opt: 169  Z-score: 195.6  bits: 46.9 E(): 8.9e-06
Smith-Waterman score: 169;  24.607% identity (57.068% similar) in 191 aa overlap (254-434:535-717)

           230       240       250       260         270       280 
KIAA05 CAEAAIKSLQGKTKVFSDIGAIQSLKRLVSYSTNGTKSALAKRA--LRLLGEEVPRPILP
                                     .. .::... . :    : ::.      .:
KIAA12 KKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRATAGPRLGWSRDLGQSNSDLDMP
          510       520       530       540       550       560    

             290       300       310       320       330       340 
KIAA05 SVPSWKEAEVQTWLQQIGFSKYCESFREQQVDGDLLLRLTEEELQTDLGMKSGITRKRFF
          .: . .: .::.. :...: .: ..  ..:. ::. ....:. .::.: .. ::.. 
KIAA12 -FAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQ
           570       580       590       600       610       620   

             350         360        370        380       390       
KIAA05 RELTELKTF--ANYSTCDRSNLADWLGSLD-PRFR-QYTYGLVSCGLDRSLLHRVSEQQL
         :  : .   .:..  : . .. :: ..  :... :.  : :    :  .:: .. ..:
KIAA12 LALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRV----DGRMLHYMTVDDL
           630       640       650       660           670         

       400           410       420       430       440       450   
KIAA05 LEDCGI----HLGVHRARILTAAREMLHSPLPCTGGKPSGDTPDVFISYRRNSGSQLASL
       :    .    ::...::  . . :     :  :   .:: .                   
KIAA12 LSLKVVSVLHHLSIKRA--IQVLRINNFEP-NCLRRRPSDENTIAPSEVQKWTNHRVMEW
     680       690         700        710       720       730      

           460       470       480       490       500       510   
KIAA05 LKVHLQLHGFSVFIDVEKLEAGKFEDKLIQSVMGARNFVLVLSPGALDKCMQDHDCKDWV
                                                                   
KIAA12 LRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIG
        740       750       760       770       780       790      




598 residues in 1 query   sequences
1986907 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:34 2008 done: Thu Dec 18 15:05:35 2008
 Total Scan time:  0.510 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]