hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05203789/chunk_1/iprscan-20080502-05203789.nocrc
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Query sequence: KIAA0520
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00044                                                 375.3   3.6e-108   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00044    1/2     336   558 ..     1   231 []   225.0  6.6e-63
SM00044    2/2    1034  1238 ..     1   231 []   150.4  1.9e-40

Alignments of top-scoring domains:
SM00044: domain 1 of 2, from 336 to 558: score 225.0, E = 6.6e-63
                   *->eekkktdrLLyqlLPasvAeslkegr.....................
                       ek  ++r++++++P+ +A++l+  ++++++++ +++ +++++++++
    KIAA0520   336    VEKALKERMIHSVMPRIIADDLMKQGdeesensvkrhatsspknrkk 382  

                   ...........epvpaesydsVTilFsDIvgFTslcsastPeqvvtlLnd
                   +++ ++ +   +p  ++  ++V+ilF+DIvgFT++++  ++ ++v lLnd
    KIAA0520   383 kssiqkapiafRPFKMQQIEEVSILFADIVGFTKMSANKSAHALVGLLND 432  

                   lysrFDriidrhggsrvvvYKVeTiGDaYMVvsGlPeeaetsaesklkdd
                   l+ rFDr++++ +     ++K+ T+GD+Y++v G+Pe++           
    KIAA0520   433 LFGRFDRLCEETK-----CEKISTLGDCYYCVAGCPEPRA---------- 467  

                   glteawcfavqhaeliadeaLdmveslktvkvphrkgelpgeglrvRiGi
                             +ha ++++++L+m+++++++  +      + e +++R+G+
    KIAA0520   468 ----------DHAYCCIEMGLGMIKAIEQFCQE------KKEMVNMRVGV 501  

                   HtGpVvaGVvGlrmpRYclFGdTVNlASRmEStgdpgqIqvSeetyslLq
                   HtG+V++G  G r+   +++ ++VNlA+ mE+ g++g++++Se+t + L 
    KIAA0520   502 HTGTVLCGILGMRRFKFDVWSNDVNLANLMEQLGVAGKVHISEATAKYL- 550  

                   lgqaerrekggfefee<-*
                           + ++e e    
    KIAA0520   551 --------DDRYEMED    558  

SM00044: domain 2 of 2, from 1034 to 1238: score 150.4, E = 1.9e-40
                   *->eekkktdrLLyqlLPasvAeslkegrepvpaesydsVTilFsDIvgF
                       +++++d LL ++ P +vAe+lk  +   +++ +ds ++ F+ Iv+F
    KIAA0520  1034    SMRDQADWLLRNIIPYHVAEQLKVSQ--TYSKNHDSGGVIFASIVNF 1078 

                   Tslc..sastPeqvvtlLndlysrFDriidrhggsrv.vvYKVeTiGDaY
                   ++++++  +   +  ++Ln+l   FD+++++ +    ++ +K++TiG +Y
    KIAA0520  1079 SEFYeeNYEGGKECYRVLNELIGDFDELLSKPD---YsSIEKIKTIGATY 1125 

                   MVvsGlPeeaetsaesklkddglteawcfavqhaelia.deaLdmveslk
                   M++sGl ++  +              + ++ q+  +i  ++a +m+ +++
    KIAA0520  1126 MAASGLNTAQAQ--------------DGSHPQEHLQILfEFAKEMMRVVD 1161 

                   tvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFGdTVNlAS
                    +++ +      + ++++R+G++ Gp  aGV+G+++  Y+++GdTVN+AS
    KIAA0520  1162 DFNSNML-----WFNFKLRVGFNHGPLTAGVIGTTKLLYDIWGDTVNIAS 1206 

                   RmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-*
                   Rm  tg+ ++IqvSee y++L       +  ++f+  +   
    KIAA0520  1207 RMDTTGVECRIQVSEESYRVL------SKMGYDFDYRG    1238 

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