# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02617.fasta.huge -Q ../query/KIAA0491.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0491, 391 aa
 vs ./tmplib.23147 library

1987114 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.7339+/-0.0054; mu= 14.9793+/- 0.367
 mean_var=109.6640+/-26.135, 0's: 0 Z-trim: 8  B-trim: 0 in 0/40
 Lambda= 0.122474

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1848  ( 445 res)   bm03548                     ( 445)  905 170.4 1.8e-43


>>KIAA1848  ( 445 res)   bm03548                          (445 aa)
 initn: 1552 init1: 897 opt: 905  Z-score: 872.3  bits: 170.4 E(): 1.8e-43
Smith-Waterman score: 1499;  58.273% identity (81.295% similar) in 417 aa overlap (18-391:31-445)

                            10        20        30        40       
KIAA04              PCAPARPRHLRLAAARSAGSARLPPRMNIMDFNVKKLAADAGTFLSR
                                     .: :: :   . ::::.::::.::: :..:
KIAA18 AGGCAEGWCPAAGGRGAVGGGGWAGGCRLRSGRARRPCG-HAMDFNMKKLASDAGIFFTR
               10        20        30         40        50         

        50        60        70        80        90       100       
KIAA04 AVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLLQPNPNARIEEFVYE
       ::::::::.:::::::::::.::::..:. :: :::::..::::::::::.::.:::.::
KIAA18 AVQFTEEKFGQAEKTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYE
      60        70        80        90       100       110         

       110       120       130       140       150       160       
KIAA04 KLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRIGTADRELIQTSAL
       :::::.:::..: :::.::: ::..:.:: : ::..::: .:..:..:.:.:..:.:...
KIAA18 KLDRKVPSRVTNGELLAQYMADAASELGPTTPYGKTLIKVAEAEKQLGAAERDFIHTASI
     120       130       140       150       160       170         

       170       180       190       200       210                 
KIAA04 NFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETR-------------
       .::::::::.:::.:::.:::.::::.:::::: :.:::::::::..             
KIAA18 SFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATCEGDTVPDFQE
     180       190       200       210       220       230         

                              220       230       240       250    
KIAA04 --------------------NSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLN
                           ...:::::..:.:::::::.::::::::::::..:::::.
KIAA18 TRPRNYILSASASALWNDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLH
     240       250       260       270       280       290         

          260       270       280            290       300         
KIAA04 DFVEAQMTYYAQCYQYMLDLQKQLGS-----FPSNYLSNNNQTSVTPVPSVLPNAIGSSA
       .::..: :::::::..::::::::::     ::........ .:  :. :. :.. ... 
KIAA18 EFVKSQTTYYAQCYRHMLDLQKQLGSSQGAIFPGTFVGTTEPAS-PPLSSTSPTTAAATM
     300       310       320       330       340        350        

     310       320        330           340       350       360    
KIAA04 MASTSGLVITSPSNLSD-LKEC----SGSRKARVLYDYDAANSTELSLLADEVITVFSVV
        .  :   .. :.. :  :.:     ::.:::::::::.::.:.::.:::::.:::.:. 
KIAA18 PVVPSVASLAPPGEASLCLEEVAPPASGTRKARVLYDYEAADSSELALLADELITVYSLP
      360       370       380       390       400       410        

          370       380       390 
KIAA04 GMDSDWLMGERGNQKGKVPITYLELLN
       ::: :::.:::::.:::::.::::::.
KIAA18 GMDPDWLIGERGNKKGKVPVTYLELLS
      420       430       440     




391 residues in 1 query   sequences
1987114 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:51 2008 done: Thu Dec 18 15:23:51 2008
 Total Scan time:  0.390 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]