hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04275215/chunk_1/iprscan-20080502-04275215.nocrc
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Query sequence: KIAA0488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00312                                                  83.4    2.8e-20   1
SM00228                                                  76.4    3.5e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1      46   131 ..     1    80 []    76.4  3.5e-18
SM00312    1/1     151   260 ..     1   142 []    83.4  2.8e-20

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 46 to 131: score 76.4, E = 3.5e-18
                   *->gglGfsivg..................gifvssvvpGspAakaGrks
                       g+Gf+++g+ +++++ ++ +++   +   vs v+pG++A++aG   
    KIAA0488    46    SGYGFNVRGqvseggqlrsingelyapLQHVSAVLPGGAADRAG--- 89   

                   lglLkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRg
                      +++GD+IleVN  ++veg+th ++vdl+++  +     ++ Ltvl  
    KIAA0488    90 ---VRKGDRILEVNH-VNVEGATHKQVVDLIRAGEK-----ELILTVLSV 130  

                   g<-*
                   +   
    KIAA0488   131 P    131  

SM00312: domain 1 of 1, from 151 to 260: score 83.4, E = 2.8e-20
                   *->dniai.vavveeetsgkkrgdgkhyyyvieietstnedveewtvyRR
                      d++ ++++++  +++ k+   + ++++v+++ + +     ++++++R
    KIAA0488   151    DYTEKqAVPISVPRY-KHVEQNGEKFVVYNVYMAG-----RQLCSKR 191  

                   YsdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkks
                   Y++F  Lh+ L+++f     + ++P lP+k+ ++                
    KIAA0488   192 YREFAILHQNLKREFA----NFTFPRLPGKWPFS---------------- 221  

                   lnnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-*
                      +se++++ RrrgLe+YL+k+++++++ +    s++++eFL+ s   
    KIAA0488   222 ---LSEQQLDARRRGLEEYLEKVCSIRVIGE----SDIMQEFLSES    260  

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