hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04275215/chunk_1/iprscan-20080502-04275215.nocrc
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Query sequence: KIAA0488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00787.14.fs PX domain                                       82.5    1.1e-24   1
PF00787.14.ls PX domain                                       84.3    3.4e-22   1
PF00788.13.ls Ras association (RalGDS/AF-6) domain            76.8    6.1e-20   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            74.9    2.3e-19   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          57.9    1.3e-15   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          59.9    7.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1      38   128 ..     1    86 []    57.9  1.3e-15
PF00595.14.ls   1/1      38   128 ..     1    86 []    59.9  7.7e-15
PF00787.14.fs   1/1     156   260 ..     1   131 []    82.5  1.1e-24
PF00787.14.ls   1/1     156   260 ..     1   131 []    84.3  3.4e-22
PF00788.13.fs   1/1     268   357 ..     1    97 []    74.9  2.3e-19
PF00788.13.ls   1/1     268   357 ..     1    97 []    76.8  6.1e-20

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 38 to 128: score 57.9, E = 1.3e-15
                   *->evtlekedkrgglGfsikggsdkga..........dkgifvsevlpG
                       v++ k  + +g Gf+++g+ ++g++ ++ +++  ++  +vs vlpG
    KIAA0488    38    VVRIVK--SESGYGFNVRGQVSEGGqlrsingelyAPLQHVSAVLPG 82   

                   sgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<
                    gaA+++G  ++GD+Il+vN +++e+ +h ++v++++   + e+ Ltvl 
    KIAA0488    83 -GAADRAG-VRKGDRILEVNHVNVEGATHKQVVDLIRAGEK-ELILTVL  128  

                   -*
                     
    KIAA0488     -    -    

PF00595.14.ls: domain 1 of 1, from 38 to 128: score 59.9, E = 7.7e-15
                   *->evtlekedkrgglGfsikggsdkga..........dkgifvsevlpG
                       v++ k  + +g Gf+++g+ ++g++ ++ +++  ++  +vs vlpG
    KIAA0488    38    VVRIVK--SESGYGFNVRGQVSEGGqlrsingelyAPLQHVSAVLPG 82   

                   sgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<
                    gaA+++G  ++GD+Il+vN +++e+ +h ++v++++   + e+ Ltvl 
    KIAA0488    83 -GAADRAG-VRKGDRILEVNHVNVEGATHKQVVDLIRAGEK-ELILTVL  128  

                   -*
                     
    KIAA0488     -    -    

PF00787.14.fs: domain 1 of 1, from 156 to 260: score 82.5, E = 1.1e-24
                   *->dpilivvvvdpetsrkkegdkkhtyyvyevttktnkewsVkRRYsdF
                        + i v  + +++       ++ ++vy+v + +    ++++RY++F
    KIAA0488   156    QAVPISVPRYKHVE-----QNGEKFVVYNVYMAG--RQLCSKRYREF 195  

                   eeLhekLlrkfpgrilPplPpKklfgryrkeslpmtsvwhssnnfdeefi
                     Lh+ L+r+f + ++P lP+K+ f+                  ++e+++
    KIAA0488   196 AILHQNLKREFANFTFPRLPGKWPFS------------------LSEQQL 227  

                   ekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                   + Rr+gLeeyL++++++ ++ + s++++eFL+++   
    KIAA0488   228 DARRRGLEEYLEKVCSIRVIGE-SDIMQEFLSES    260  

PF00787.14.ls: domain 1 of 1, from 156 to 260: score 84.3, E = 3.4e-22
                   *->dpilivvvvdpetsrkkegdkkhtyyvyevttktnkewsVkRRYsdF
                        + i v  + +++       ++ ++vy+v + +    ++++RY++F
    KIAA0488   156    QAVPISVPRYKHVE-----QNGEKFVVYNVYMAG--RQLCSKRYREF 195  

                   eeLhekLlrkfpgrilPplPpKklfgryrkeslpmtsvwhssnnfdeefi
                     Lh+ L+r+f + ++P lP+K+ f+                  ++e+++
    KIAA0488   196 AILHQNLKREFANFTFPRLPGKWPFS------------------LSEQQL 227  

                   ekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                   + Rr+gLeeyL++++++ ++ + s++++eFL+++   
    KIAA0488   228 DARRRGLEEYLEKVCSIRVIGE-SDIMQEFLSES    260  

PF00788.13.fs: domain 1 of 1, from 268 to 357: score 74.9, E = 2.3e-19
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      ++ +lrV+++dgt   ++t++v kn+T+++V +a++ K g+d ++ +
    KIAA0488   268    SDVELRVALPDGT---TVTVRVKKNSTTDQVYQAIAAKVGMDSTTVN 311  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.rsrFlLrrre
                   +++L+     ++++ + r +L ++E P++++ q++++a++++++  r++ 
    KIAA0488   312 YFALF----EVISHSFVR-KLAPNEFPHKLYIQNYTSAVpGTCLTIRKWL 356  

                   d<-*
                   +   
    KIAA0488   357 F    357  

PF00788.13.ls: domain 1 of 1, from 268 to 357: score 76.8, E = 6.1e-20
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      ++ +lrV+++dgt   ++t++v kn+T+++V +a++ K g+d ++ +
    KIAA0488   268    SDVELRVALPDGT---TVTVRVKKNSTTDQVYQAIAAKVGMDSTTVN 311  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.rsrFlLrrre
                   +++L+     ++++ + r +L ++E P++++ q++++a++++++  r++ 
    KIAA0488   312 YFALF----EVISHSFVR-KLAPNEFPHKLYIQNYTSAVpGTCLTIRKWL 356  

                   d<-*
                   +   
    KIAA0488   357 F    357  

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