# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/af14633.fasta.nr -Q ../query/KIAA0488.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0488, 523 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7817239 sequences Expectation_n fit: rho(ln(x))= 5.4455+/-0.000188; mu= 10.7624+/- 0.011 mean_var=92.9347+/-17.745, 0's: 31 Z-trim: 67 B-trim: 3 in 1/66 Lambda= 0.133041 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|55664826|emb|CAH73501.1| sorting nexin family m ( 528) 3554 692.4 7.8e-197 gi|114559513|ref|XP_001172506.1| PREDICTED: sortin ( 532) 3540 689.8 5e-196 gi|166214988|sp|Q96L92.2|SNX27_HUMAN RecName: Full ( 541) 3540 689.8 5.1e-196 gi|163781026|gb|ABY40802.1| sorting nexin family m ( 541) 3536 689.0 8.7e-196 gi|169410930|gb|ACA57940.1| sorting nexin family m ( 541) 3535 688.8 9.9e-196 gi|166092123|gb|ABY82103.1| sorting nexin family m ( 542) 3524 686.7 4.3e-195 gi|166200288|sp|A5PKA5.1|SNX27_BOVIN RecName: Full ( 541) 3511 684.2 2.4e-194 gi|149030741|gb|EDL85778.1| sorting nexin family m ( 526) 3493 680.7 2.6e-193 gi|73981438|ref|XP_862093.1| PREDICTED: similar to ( 542) 3493 680.7 2.7e-193 gi|74184617|dbj|BAE27921.1| unnamed protein produc ( 526) 3492 680.5 3e-193 gi|22324239|dbj|BAC10333.1| PDZ protein Mrt1b [Rat ( 526) 3488 679.8 5e-193 gi|149030740|gb|EDL85777.1| sorting nexin family m ( 539) 3479 678.0 1.7e-192 gi|166200308|sp|Q3UHD6.2|SNX27_MOUSE RecName: Full ( 539) 3478 677.9 1.9e-192 gi|166200309|sp|Q8K4V4.2|SNX27_RAT RecName: Full=S ( 539) 3474 677.1 3.3e-192 gi|32425866|gb|AAH53495.1| Snx27 protein [Mus musc ( 532) 3464 675.2 1.2e-191 gi|22324237|dbj|BAC10332.1| PDZ protein Mrt1a [Rat ( 539) 3463 675.0 1.4e-191 gi|190344045|gb|ACE75822.1| sorting nexin family m ( 538) 3433 669.2 7.7e-190 gi|126313853|ref|XP_001371747.1| PREDICTED: hypoth ( 615) 3417 666.2 7.2e-189 gi|109016237|ref|XP_001108530.1| PREDICTED: sortin ( 525) 3415 665.8 8.3e-189 gi|109016240|ref|XP_001108589.1| PREDICTED: sortin ( 529) 3401 663.1 5.4e-188 gi|109016234|ref|XP_001108415.1| PREDICTED: sortin ( 538) 3401 663.1 5.5e-188 gi|73981442|ref|XP_540318.2| PREDICTED: similar to ( 527) 3308 645.2 1.3e-182 gi|53133906|emb|CAG32282.1| hypothetical protein [ ( 507) 3123 609.7 6e-172 gi|90112007|gb|AAI14222.1| LOC414692 protein [Xeno ( 547) 3121 609.3 8.3e-172 gi|33990036|gb|AAH56315.1| Sorting nexin family me ( 569) 2997 585.6 1.3e-164 gi|119573809|gb|EAW53424.1| sorting nexin family m ( 530) 2910 568.8 1.3e-159 gi|94734455|emb|CAK11385.1| novel protein similar ( 567) 2879 562.9 8.2e-158 gi|15529066|gb|AAK97797.1| sorting nexin 27 [Homo ( 435) 2867 560.5 3.3e-157 gi|119573813|gb|EAW53428.1| sorting nexin family m ( 435) 2862 559.5 6.5e-157 gi|149751458|ref|XP_001492429.1| PREDICTED: simila ( 448) 2828 553.0 6.1e-155 gi|194036216|ref|XP_001929665.1| PREDICTED: simila ( 448) 2827 552.8 7e-155 gi|183637596|gb|ACC64598.1| sorting nexin family m ( 511) 2824 552.3 1.1e-154 gi|149030743|gb|EDL85780.1| sorting nexin family m ( 448) 2822 551.9 1.4e-154 gi|148706795|gb|EDL38742.1| mCG5009, isoform CRA_b ( 448) 2821 551.7 1.6e-154 gi|217030862|gb|ACJ74024.1| sorting nexin family m ( 437) 2818 551.1 2.3e-154 gi|73981440|ref|XP_862119.1| PREDICTED: similar to ( 448) 2818 551.1 2.3e-154 gi|109016243|ref|XP_001108477.1| PREDICTED: sortin ( 436) 2714 531.1 2.3e-148 gi|46329766|gb|AAH68958.1| LOC414692 protein [Xeno ( 443) 2584 506.2 7.6e-141 gi|189442303|gb|AAI67638.1| LOC100170579 protein [ ( 433) 2536 497.0 4.4e-138 gi|48734866|gb|AAH71825.1| SNX27 protein [Homo sap ( 367) 2393 469.5 7.2e-130 gi|81294345|gb|AAI07863.1| SNX27 protein [Homo sap ( 365) 2378 466.6 5.3e-129 gi|194036218|ref|XP_001927952.1| PREDICTED: simila ( 453) 2343 459.9 6.5e-127 gi|119573810|gb|EAW53425.1| sorting nexin family m ( 355) 2313 454.1 2.9e-125 gi|196475702|gb|ACG76411.1| sorting nexin family m ( 913) 2129 419.1 2.5e-114 gi|215504551|gb|EEC14045.1| phosphatase/kinase dom ( 530) 2068 407.2 5.6e-111 gi|91078172|ref|XP_967060.1| PREDICTED: similar to ( 506) 2067 407.0 6.2e-111 gi|212513417|gb|EEB15994.1| Sorting nexin-27, puta ( 509) 2046 403.0 1e-109 gi|108878813|gb|EAT43038.1| sorting nexin [Aedes a ( 506) 2043 402.4 1.5e-109 gi|157012997|gb|EAL38656.2| AGAP001110-PA [Anophel ( 511) 2014 396.8 7.2e-108 gi|190619201|gb|EDV34725.1| GF21468 [Drosophila an ( 542) 2007 395.5 1.9e-107 >>gi|55664826|emb|CAH73501.1| sorting nexin family membe (528 aa) initn: 3554 init1: 3554 opt: 3554 Z-score: 3690.0 bits: 692.4 E(): 7.8e-197 Smith-Waterman score: 3554; 100.000% identity (100.000% similar) in 523 aa overlap (1-523:6-528) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 430 440 450 460 470 480 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::::: gi|556 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY 490 500 510 520 >>gi|114559513|ref|XP_001172506.1| PREDICTED: sorting ne (532 aa) initn: 3540 init1: 3540 opt: 3540 Z-score: 3675.5 bits: 689.8 E(): 5e-196 Smith-Waterman score: 3540; 100.000% identity (100.000% similar) in 521 aa overlap (1-521:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 430 440 450 460 470 480 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::: gi|114 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVILNSP 490 500 510 520 530 >>gi|166214988|sp|Q96L92.2|SNX27_HUMAN RecName: Full=Sor (541 aa) initn: 3540 init1: 3540 opt: 3540 Z-score: 3675.4 bits: 689.8 E(): 5.1e-196 Smith-Waterman score: 3540; 100.000% identity (100.000% similar) in 521 aa overlap (1-521:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 430 440 450 460 470 480 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::: gi|166 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVA 490 500 510 520 530 540 gi|166 T >>gi|163781026|gb|ABY40802.1| sorting nexin family membe (541 aa) initn: 3536 init1: 3536 opt: 3536 Z-score: 3671.2 bits: 689.0 E(): 8.7e-196 Smith-Waterman score: 3536; 99.808% identity (100.000% similar) in 521 aa overlap (1-521:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|163 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 430 440 450 460 470 480 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::: gi|163 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVA 490 500 510 520 530 540 gi|163 T >>gi|169410930|gb|ACA57940.1| sorting nexin family membe (541 aa) initn: 3535 init1: 3535 opt: 3535 Z-score: 3670.2 bits: 688.8 E(): 9.9e-196 Smith-Waterman score: 3535; 99.616% identity (100.000% similar) in 521 aa overlap (1-521:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|169 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|169 CEGYNEIIFPHCACDSRRKGHVITAVSITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 430 440 450 460 470 480 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::: gi|169 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDMA 490 500 510 520 530 540 gi|169 T >>gi|166092123|gb|ABY82103.1| sorting nexin family membe (542 aa) initn: 3445 init1: 3445 opt: 3524 Z-score: 3658.8 bits: 686.7 E(): 4.3e-195 Smith-Waterman score: 3524; 99.617% identity (99.808% similar) in 522 aa overlap (1-521:6-527) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGG-SGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRG :::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|166 MADEDGEGIHPSAPHRNGGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRG 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 QVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 QVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVD 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 LIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 LIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEK 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 FVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 FVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGL 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 EEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQ 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 VYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRK :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|166 VYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRK 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 WLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 WLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLR 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 TCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 TCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDT 430 440 450 460 470 480 480 490 500 510 520 KIAA04 DEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY ::::::::::::::::::::::::::::::::::::::::::::::: gi|166 DEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARPQQRDM 490 500 510 520 530 540 gi|166 AT >>gi|166200288|sp|A5PKA5.1|SNX27_BOVIN RecName: Full=Sor (541 aa) initn: 3511 init1: 3511 opt: 3511 Z-score: 3645.3 bits: 684.2 E(): 2.4e-194 Smith-Waterman score: 3511; 99.040% identity (99.616% similar) in 521 aa overlap (1-521:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ ::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|166 MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: gi|166 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|166 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW ::::::::::::::::::::::::.:::::::::::::::::.::::::::::::::::: gi|166 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKW 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 430 440 450 460 470 480 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::: gi|166 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVA 490 500 510 520 530 540 gi|166 T >>gi|149030741|gb|EDL85778.1| sorting nexin family membe (526 aa) initn: 3416 init1: 3416 opt: 3493 Z-score: 3626.8 bits: 680.7 E(): 2.6e-193 Smith-Waterman score: 3493; 98.470% identity (99.235% similar) in 523 aa overlap (1-523:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ :::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|149 MADEDGEGIHPSAPHRNGGGGGG--SGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: gi|149 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL 60 70 80 90 100 110 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|149 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKF 120 130 140 150 160 170 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 180 190 200 210 220 230 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|149 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGATVTVRVKKNSTTDQV 240 250 260 270 280 290 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW ::::::::::::::::::::::::.:::::::::::::::::.::::::::::::::::: gi|149 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKW 300 310 320 330 340 350 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT 360 370 380 390 400 410 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 420 430 440 450 460 470 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY 480 490 500 510 520 >>gi|73981438|ref|XP_862093.1| PREDICTED: similar to PDZ (542 aa) initn: 3414 init1: 3414 opt: 3493 Z-score: 3626.6 bits: 680.7 E(): 2.7e-193 Smith-Waterman score: 3493; 98.659% identity (99.425% similar) in 522 aa overlap (1-521:6-527) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGG-SGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRG :::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|739 MADEDGEGIHPSAPHRNGGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRG 10 20 30 40 50 60 60 70 80 90 100 110 KIAA04 QVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVD :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|739 QVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVD 70 80 90 100 110 120 120 130 140 150 160 170 KIAA04 LIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEK ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|739 LIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEK 130 140 150 160 170 180 180 190 200 210 220 230 KIAA04 FVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 FVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGL 190 200 210 220 230 240 240 250 260 270 280 290 KIAA04 EEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQ 250 260 270 280 290 300 300 310 320 330 340 350 KIAA04 VYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRK :::::::.:::::::::::::::::.:::::::::::::::::.::::::::::::.::: gi|739 VYQAIAAEVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLAIRK 310 320 330 340 350 360 360 370 380 390 400 410 KIAA04 WLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 WLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLR 370 380 390 400 410 420 420 430 440 450 460 470 KIAA04 TCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDT 430 440 450 460 470 480 480 490 500 510 520 KIAA04 DEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY ::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDV 490 500 510 520 530 540 gi|739 AT >>gi|74184617|dbj|BAE27921.1| unnamed protein product [M (526 aa) initn: 3415 init1: 3415 opt: 3492 Z-score: 3625.8 bits: 680.5 E(): 3e-193 Smith-Waterman score: 3492; 98.470% identity (99.235% similar) in 523 aa overlap (1-523:6-526) 10 20 30 40 50 KIAA04 GEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ :::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|741 MADEDGEGIHPSAPHRNGGGGGG--SGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ 10 20 30 40 50 60 70 80 90 100 110 KIAA04 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: gi|741 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL 60 70 80 90 100 110 120 130 140 150 160 170 KIAA04 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|741 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKF 120 130 140 150 160 170 180 190 200 210 220 230 KIAA04 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE 180 190 200 210 220 230 240 250 260 270 280 290 KIAA04 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV 240 250 260 270 280 290 300 310 320 330 340 350 KIAA04 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW ::::::::::::::::::::::::.:::::::::::::::::.::::::::::::::::: gi|741 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKW 300 310 320 330 340 350 360 370 380 390 400 410 KIAA04 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT :::::::.:::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|741 LFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRT 360 370 380 390 400 410 420 430 440 450 460 470 KIAA04 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD 420 430 440 450 460 470 480 490 500 510 520 KIAA04 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY :::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY 480 490 500 510 520 523 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 00:51:31 2009 done: Thu Mar 5 00:55:56 2009 Total Scan time: 1580.690 Total Display time: 0.230 Function used was FASTA [version 34.26.5 April 26, 2007]