# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/af14633.fasta.huge -Q ../query/KIAA0488.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0488, 523 aa vs ./tmplib.23147 library 1986982 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.6193+/-0.00586; mu= 3.2221+/- 0.393 mean_var=146.7876+/-36.439, 0's: 0 Z-trim: 11 B-trim: 92 in 1/39 Lambda= 0.105859 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0064 ( 495 res) ha01355 ( 495) 406 74.1 2.7e-14 >>KIAA0064 ( 495 res) ha01355 (495 aa) initn: 269 init1: 174 opt: 406 Z-score: 348.5 bits: 74.1 E(): 2.7e-14 Smith-Waterman score: 436; 25.707% identity (58.098% similar) in 389 aa overlap (161-520:29-412) 140 150 160 170 180 KIAA04 PPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRY--KHVEQNGEKFVVYNVYMAGRQLC :.:. . ...: .:.::... : : KIAA00 AAEGERAEPLRPSQSGARPCRAVGNMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHC 10 20 30 40 50 190 200 210 220 230 240 KIAA04 SKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIG :: .. ::..:..:.. ..: .: : :::. ... ::. ::.:.. : . ..: KIAA00 RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLG 60 70 80 90 100 110 250 260 270 280 290 300 KIAA04 ESDIMQEFLSESDENYNGVS--DVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMD :. .. :: ..... . : .: :.: : .: : : : .. :..: .:.:::. . KIAA00 SSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLP 120 130 140 150 160 170 310 320 330 340 350 360 KIAA04 STTVNYFALFEVI-----SHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEE . ..::.:: : . :::::: :.:. . . . : : : . .. KIAA00 DDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDD 180 190 200 210 220 230 370 380 390 400 410 420 KIAA04 EILLNDNDLAVTYFFHQAVDDVKKGYIKA-EEKSYQLQKLYEQRKMVMYLNMLRTCEGYN ... .: .... .. :.:.:...:.: . .:. ::..: :. . .: . .: . :. KIAA00 DVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYG 240 250 260 270 280 290 430 440 450 460 470 KIAA04 EIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW------- . : :. : .: :... . ....:. ::.. .:. .:. : KIAA00 YLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVP 300 310 320 330 340 350 480 490 500 510 520 KIAA04 ----DTDEEG-------MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKE .:. : . . ::: .. . .:: : .: .: :.. . :: .: KIAA00 LPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS 360 370 380 390 400 410 KIAA04 EY KIAA00 GGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPS 420 430 440 450 460 470 523 residues in 1 query sequences 1986982 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:45 2008 done: Thu Dec 18 15:23:46 2008 Total Scan time: 0.450 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]