hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04261689/chunk_1/iprscan-20080502-04261689.nocrc
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Query sequence: KIAA0487
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00293.18.fs NUDIX domain                                    82.9    1.2e-24   1
PF00293.18.ls NUDIX domain                                    84.9    2.3e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00293.18.fs   1/1      71   200 ..     1   133 []    82.9  1.2e-24
PF00293.18.ls   1/1      71   200 ..     1   133 []    84.9  2.3e-22

Alignments of top-scoring domains:
PF00293.18.fs: domain 1 of 1, from 71 to 200: score 82.9, E = 1.2e-24
                   *->rrraVgvvllnedg..evLLvrrsrpppglWelPGGgvepGEtpeeA
                       +  ++++ ++ + ++evLLv  sr p ++W++PGGg+ep E p  A
    KIAA0487    71    FKKRAACLCFRSEQedEVLLVSSSRYP-DQWIVPGGGMEPEEEPGGA 116  

                   AvREleEEtGlrvedsvvllvlllgvleypap.rdvvhvflael.gge.e
                   AvRE++EE+G+++      l +llg +e++++++  ++v+++++++ ++ 
    KIAA0487   117 AVREVYEEAGVKG-----KLGRLLGIFENQDRkHR-TYVYVLTVtEILeD 160  

                   pqpdpgEvaevrWvpleellalllageireeakvlalllal<-*
                   +++  +  ++ +W+ +e++++ l+ +++ + a  l++l      
    KIAA0487   161 WEDSVNIGRKREWFKVEDAIKVLQCHKPVH-AEYLEKLKLG    200  

PF00293.18.ls: domain 1 of 1, from 71 to 200: score 84.9, E = 2.3e-22
                   *->rrraVgvvllnedg..evLLvrrsrpppglWelPGGgvepGEtpeeA
                       +  ++++ ++ + ++evLLv  sr p ++W++PGGg+ep E p  A
    KIAA0487    71    FKKRAACLCFRSEQedEVLLVSSSRYP-DQWIVPGGGMEPEEEPGGA 116  

                   AvREleEEtGlrvedsvvllvlllgvleypap.rdvvhvflael.gge.e
                   AvRE++EE+G+++      l +llg +e++++++  ++v+++++++ ++ 
    KIAA0487   117 AVREVYEEAGVKG-----KLGRLLGIFENQDRkHR-TYVYVLTVtEILeD 160  

                   pqpdpgEvaevrWvpleellalllageireeakvlalllal<-*
                   +++  +  ++ +W+ +e++++ l+ +++ + a  l++l      
    KIAA0487   161 WEDSVNIGRKREWFKVEDAIKVLQCHKPVH-AEYLEKLKLG    200  

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