# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg00837.fasta.nr -Q ../query/KIAA0485.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0485, 83 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826573 sequences Expectation_n fit: rho(ln(x))= 4.3329+/-0.000178; mu= 7.7029+/- 0.010 mean_var=54.3269+/-10.872, 0's: 44 Z-trim: 52 B-trim: 2779 in 2/65 Lambda= 0.174007 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119595162|gb|EAW74756.1| hCG1820410 [Homo sapie ( 86) 387 104.0 2.7e-21 gi|119577137|gb|EAW56733.1| similar to zinc finger ( 115) 358 96.8 5.3e-19 gi|67970573|dbj|BAE01629.1| unnamed protein produc ( 145) 353 95.7 1.5e-18 gi|7020440|dbj|BAA91131.1| unnamed protein product ( 152) 334 90.9 4.3e-17 gi|119628850|gb|EAX08445.1| hCG2019873 [Homo sapie ( 127) 333 90.6 4.4e-17 gi|34527471|dbj|BAC85397.1| unnamed protein produc ( 132) 333 90.6 4.6e-17 gi|119613815|gb|EAW93409.1| hCG2039073 [Homo sapie ( 124) 330 89.8 7.3e-17 gi|119626937|gb|EAX06532.1| hCG2031845 [Homo sapie ( 111) 324 88.3 1.9e-16 gi|55960867|emb|CAI14684.1| retinol binding protei ( 181) 325 88.7 2.3e-16 gi|40362753|gb|AAR84645.1| alpha 1A adrenoceptor i ( 370) 328 89.7 2.4e-16 gi|21758420|dbj|BAC05300.1| unnamed protein produc ( 195) 321 87.7 4.9e-16 gi|90084499|dbj|BAE91091.1| unnamed protein produc ( 98) 316 86.2 7e-16 gi|119569543|gb|EAW49158.1| hCG1648656, isoform CR ( 111) 316 86.3 7.7e-16 gi|11493483|gb|AAG35515.1|AF130117_48 PRO2550 [Hom ( 118) 315 86.0 9.6e-16 gi|14043238|gb|AAH07609.1| E2F2 protein [Homo sapi ( 83) 313 85.4 1e-15 gi|61608585|gb|AAX47089.1| alpha-1A adrenoceptor v ( 370) 318 87.2 1.3e-15 gi|90085168|dbj|BAE91325.1| unnamed protein produc ( 181) 314 85.9 1.6e-15 gi|12698182|dbj|BAB21918.1| hypothetical protein [ ( 122) 308 84.3 3.3e-15 gi|119603146|gb|EAW82740.1| hypothetical protein F ( 91) 303 82.9 6.4e-15 gi|169172641|ref|XP_001713735.1| PREDICTED: hypoth ( 96) 303 83.0 6.6e-15 gi|38046566|gb|AAR09142.1| PDZ and LIM domain 5 [H ( 136) 303 83.1 8.6e-15 gi|21749258|dbj|BAC03563.1| unnamed protein produc ( 151) 303 83.1 9.3e-15 gi|7770237|gb|AAF69654.1|AF119917_62 PRO2822 [Homo ( 102) 299 82.0 1.4e-14 gi|119574076|gb|EAW53691.1| hCG1747827 [Homo sapie ( 102) 299 82.0 1.4e-14 gi|222834591|gb|EEE73054.1| predicted protein [Pop ( 105) 296 81.2 2.4e-14 gi|222834593|gb|EEE73056.1| predicted protein [Pop ( 55) 293 80.3 2.5e-14 gi|10434777|dbj|BAB14371.1| unnamed protein produc ( 177) 296 81.4 3.6e-14 gi|34531922|dbj|BAC86261.1| unnamed protein produc ( 152) 295 81.1 3.8e-14 gi|119628352|gb|EAX07947.1| hCG1817231 [Homo sapie ( 156) 294 80.9 4.6e-14 gi|121940484|sp|Q0VDF0.1|YS005_HUMAN RecName: Full ( 195) 293 80.7 6.4e-14 gi|34533225|dbj|BAC86633.1| unnamed protein produc ( 165) 290 79.9 9.6e-14 gi|119605808|gb|EAW85402.1| hCG1778978 [Homo sapie ( 94) 285 78.4 1.5e-13 gi|14388331|dbj|BAB60728.1| hypothetical protein [ ( 135) 286 78.8 1.7e-13 gi|114660780|ref|XP_001170404.1| PREDICTED: simila ( 440) 290 80.2 2e-13 gi|114660782|ref|XP_001170387.1| PREDICTED: hypoth ( 472) 290 80.3 2.1e-13 gi|119583156|gb|EAW62752.1| hCG2039002 [Homo sapie ( 119) 284 78.3 2.1e-13 gi|21708167|gb|AAH33883.1| RBP7 protein [Homo sapi ( 225) 286 79.0 2.4e-13 gi|57208740|emb|CAI40721.1| emopamil binding prote ( 152) 283 78.1 3e-13 gi|222838934|gb|EEE77285.1| predicted protein [Pop ( 130) 282 77.8 3.2e-13 gi|119614585|gb|EAW94179.1| ubiquitin-conjugating ( 128) 281 77.5 3.8e-13 gi|119604242|gb|EAW83836.1| hCG2014340 [Homo sapie ( 132) 281 77.5 3.9e-13 gi|119569304|gb|EAW48919.1| hCG2028158 [Homo sapie ( 136) 280 77.3 4.7e-13 gi|119614206|gb|EAW93800.1| hypothetical protein M ( 132) 279 77.0 5.5e-13 gi|119567882|gb|EAW47497.1| hCG2029440 [Homo sapie ( 141) 279 77.1 5.8e-13 gi|7770139|gb|AAF69605.1|AF119917_13 PRO1722 [Homo ( 118) 278 76.8 6e-13 gi|109050796|ref|XP_001088174.1| PREDICTED: simila ( 639) 284 78.9 7.6e-13 gi|34534369|dbj|BAC86986.1| unnamed protein produc ( 124) 276 76.3 8.8e-13 gi|119626809|gb|EAX06404.1| hCG2031252 [Homo sapie ( 126) 276 76.3 8.9e-13 gi|172046150|sp|Q6UX73.2|CP089_HUMAN RecName: Full ( 402) 280 77.7 1.1e-12 gi|22761204|dbj|BAC11494.1| unnamed protein produc ( 434) 280 77.7 1.1e-12 >>gi|119595162|gb|EAW74756.1| hCG1820410 [Homo sapiens] (86 aa) initn: 432 init1: 383 opt: 387 Z-score: 538.4 bits: 104.0 E(): 2.7e-21 Smith-Waterman score: 387; 71.429% identity (83.117% similar) in 77 aa overlap (1-77:5-81) 10 20 30 40 50 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSLPSSWDYRCTPP .::. :::::::: :. ::::: ::: :::: :.:..::::::::::::: .:: gi|119 MLALFFLFFCFFFFEMESCCVTQAGVQWRDLGPLQPPPPQFKQFSCLSLPSSWDYRRVPP 10 20 30 40 50 60 60 70 80 KIAA04 AWVIFVFLVEMGFQHVGQADLGTPDLK . :::::::::.::::: : gi|119 HPANFVFLVEMGFHHVGQAGLELLTL 70 80 >>gi|119577137|gb|EAW56733.1| similar to zinc finger pro (115 aa) initn: 358 init1: 358 opt: 358 Z-score: 497.4 bits: 96.8 E(): 5.3e-19 Smith-Waterman score: 358; 75.758% identity (86.364% similar) in 66 aa overlap (12-77:1-66) 10 20 30 40 50 60 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSLPSSWDYRCTPPAWVI :: :::: ::::: ::.::::: : :.:::::::::::::::.:: . gi|119 MEFHSVAQAGVQWHDLSSLQPPPPGFKRFSCLSLPSSWDYRCVPPRPAY 10 20 30 40 70 80 KIAA04 FVFLVEMGFQHVGQADLGTPDLK :.:::: ::.:::::.: gi|119 FLFLVETGFHHVGQASLELLTSDDPPASASQNAGITGVSHRAQLQNIFKMCNIIVDVLFH 50 60 70 80 90 100 >>gi|67970573|dbj|BAE01629.1| unnamed protein product [M (145 aa) initn: 367 init1: 342 opt: 353 Z-score: 489.2 bits: 95.7 E(): 1.5e-18 Smith-Waterman score: 353; 65.333% identity (78.667% similar) in 75 aa overlap (3-77:7-81) 10 20 30 40 50 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSLPSSWDYRCTPP .. :.::: .: :: .:::: .::::::: :.: ::::::::.:::::: :: gi|679 MQITEPFFFFLFFFLRQSCSVIQSGVQWHNLGSLQPPPPEFNRFSCLSLPNSWDYRCMPP 10 20 30 40 50 60 60 70 80 KIAA04 AWVIFVFLVEMGFQHVGQADLGTPDLK . :::::: ::.:::: : gi|679 YPANFVFLVETGFHHVGQPGLELLTSSDLPASASQNAGITGVSHCTQPESSFCPVLYPCC 70 80 90 100 110 120 >>gi|7020440|dbj|BAA91131.1| unnamed protein product [Ho (152 aa) initn: 355 init1: 323 opt: 334 Z-score: 463.2 bits: 90.9 E(): 4.3e-17 Smith-Waterman score: 334; 64.103% identity (78.205% similar) in 78 aa overlap (1-77:17-94) 10 20 30 40 KIAA04 YFLYSFFFFFEMESHS-VALAGVQWCDLGSLQPPSPRFRRFSCL .:: .:::: .: . :: ::::: .::::::: : :..:::: gi|702 MVHSPRSLVANPSQVLFFLSFLFFFFLRQSFALVAQAGVQWRNLGSLQPPPPGFKQFSCL 10 20 30 40 50 60 50 60 70 80 KIAA04 SLPSSWDYRCTPPAWVIFVFLVEMGFQHVGQADLGTPDLK :: :::::: .:: . :::::.::: ::::. : gi|702 SLLSSWDYRHAPPCPAYFVFLVDMGFPHVGQTGLELLTSGDPPASASQSAGITGGSHRAQ 70 80 90 100 110 120 gi|702 PTSSNPYGIVFFFLPVKTFSGMSQEAGDCRET 130 140 150 >>gi|119628850|gb|EAX08445.1| hCG2019873 [Homo sapiens] (127 aa) initn: 334 init1: 265 opt: 333 Z-score: 462.9 bits: 90.6 E(): 4.4e-17 Smith-Waterman score: 333; 70.149% identity (86.567% similar) in 67 aa overlap (12-77:1-67) 10 20 30 40 50 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSLPSSWDYRCTPPAWV- ::::::: .:.: :.::::::: :.:.:::::::::::::: ::: . gi|119 MESHSVAQTGMQCCNLGSLQPPPPEFKRFSCLSLPSSWDYRHTPPCLAN 10 20 30 40 60 70 80 KIAA04 IFVFLVEMGFQHVGQADLGTPDLK .:.::.: :: :.:::.: gi|119 FFIFLLETGFCHIGQASLKLLTSGDPPASAFQSATAPGQHPLAFHQTMKCLVHDCSLFPE 50 60 70 80 90 100 >>gi|34527471|dbj|BAC85397.1| unnamed protein product [H (132 aa) initn: 329 init1: 329 opt: 333 Z-score: 462.6 bits: 90.6 E(): 4.6e-17 Smith-Waterman score: 333; 61.039% identity (76.623% similar) in 77 aa overlap (1-77:16-92) 10 20 30 40 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSL . .. ::::.. :: .:::::.::: ::: : :.::::::: gi|345 MWSASSPTNYAGVLSFSIFLFFFFLRRSFVLVAQTGVQWCNLGSPQPPPPGFKRFSCLSL 10 20 30 40 50 60 50 60 70 80 KIAA04 PSSWDYRCTPPAWVIFVFLVEMGFQHVGQADLGTPDLK ::::.:: .:: . :.:::: :: ::::: : gi|345 PSSWEYRHVPPHPANFLFLVETGFLHVGQAGLEFVTSGDPPALASQSARIIGVSHRAQPS 70 80 90 100 110 120 gi|345 QTFKASKSLSVK 130 >>gi|119613815|gb|EAW93409.1| hCG2039073 [Homo sapiens] (124 aa) initn: 247 init1: 247 opt: 330 Z-score: 458.9 bits: 89.8 E(): 7.3e-17 Smith-Waterman score: 330; 64.557% identity (74.684% similar) in 79 aa overlap (1-77:4-82) 10 20 30 40 50 KIAA04 YFLYSFFF-FFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSLPSSWDYRCTPP . :: : : ::: ::::.. ::::::.::: :: :.::::::: ::::::: : gi|119 NMFFVLYRFCFCFFETESHSLTQAGVQWCELGSPQPLPSGFKRFSCLSLLSSWDYRCPSP 10 20 30 40 50 60 60 70 80 KIAA04 AWV-IFVFLVEMGFQHVGQADLGTPDLK . .:::::: : ::::.:: gi|119 RQANFFVFLVEARFCHVGQVDLELLTSDDPHAWASQSAGVRGIKGGDHPSYCLMPNFCLQ 70 80 90 100 110 120 >>gi|119626937|gb|EAX06532.1| hCG2031845 [Homo sapiens] (111 aa) initn: 322 init1: 289 opt: 324 Z-score: 451.4 bits: 88.3 E(): 1.9e-16 Smith-Waterman score: 324; 69.565% identity (76.812% similar) in 69 aa overlap (2-69:33-101) 10 20 30 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQ :. :::::: ::.::: :::::::::::: gi|119 TVFKAEIVHYVNNLLYVLREMLRWCHKMCLFFSFFFFFFEAESRSVAQAGVQWCDLGSLQ 10 20 30 40 50 60 40 50 60 70 80 KIAA04 PPSPRFRRFSCLSLPSSWDYRCTPPAWV-IFVFLVEMGFQHVGQADLGTPDLK : : : ::::::: ::::: :: . .:::::. :: gi|119 APPPGFTPFSCLSLPRSWDYRLPPPRLANFFVFLVKTGFIVLARMVSIS 70 80 90 100 110 >>gi|55960867|emb|CAI14684.1| retinol binding protein 7, (181 aa) initn: 325 init1: 325 opt: 325 Z-score: 449.9 bits: 88.7 E(): 2.3e-16 Smith-Waterman score: 325; 72.727% identity (81.818% similar) in 66 aa overlap (12-77:1-66) 10 20 30 40 50 60 KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSCLSLPSSWDYRCTPPAWVI :::.::: :::::::::::::: : :..:: .:: :::::: .:: . gi|559 MESRSVAQAGVQWCDLGSLQPPPPGFKQFSYFSLQSSWDYRYVPPCPAN 10 20 30 40 70 80 KIAA04 FVFLVEMGFQHVGQADLGTPDLK ::::::::: :: :: : gi|559 FVFLVEMGFLHVDQAGLKLLTSGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYF 50 60 70 80 90 100 >>gi|40362753|gb|AAR84645.1| alpha 1A adrenoceptor isofo (370 aa) initn: 238 init1: 238 opt: 328 Z-score: 449.8 bits: 89.7 E(): 2.4e-16 Smith-Waterman score: 328; 66.667% identity (74.359% similar) in 78 aa overlap (8-77:288-365) 10 20 30 KIAA04 YFLYSFFFFFEMESHSVAL---AGVQWCDLGSLQPPS ::. : :.: ::::: :::::::: gi|403 SVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIDEVSLCHQAGVQWHDLGSLQPPP 260 270 280 290 300 310 40 50 60 70 80 KIAA04 PRFRRFSCLSLPSSWDYRCTPP-----AWVIFVFLVEMGFQHVGQADLGTPDLK : :.:::::::::::::: .:: : .::::::: ::.:::: :: gi|403 PGFKRFSCLSLPSSWDYRDVPPGRRHQAQLIFVFLVETGFHHVGQDDLDLLTS 320 330 340 350 360 370 83 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 00:32:14 2009 done: Thu Mar 5 00:39:08 2009 Total Scan time: 911.310 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]