# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00837.fasta.huge -Q ../query/KIAA0485.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0485, 83 aa
 vs ./tmplib.23147 library

1987422 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.8356+/-0.00407; mu= 12.7307+/- 0.278
 mean_var=57.0645+/-13.069, 0's: 0 Z-trim: 3  B-trim: 3 in 1/39
 Lambda= 0.169782

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1655  ( 162 res)   hg03341                     ( 162)  248 67.4 1.4e-13


>>KIAA1655  ( 162 res)   hg03341                          (162 aa)
 initn: 247 init1: 247 opt: 248  Z-score: 335.6  bits: 67.4 E(): 1.4e-13
Smith-Waterman score: 248;  52.857% identity (68.571% similar) in 70 aa overlap (1-68:64-133)

                                               10        20        
KIAA04                               YFLYSF--FFFFEMESHSVALAGVQWCDLG
                                     ..:.:.  :::::..      :::::: ::
KIAA16 EGSVQESLRSVRNSRCALPMLSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLG
            40        50        60        70        80        90   

       30        40        50        60        70        80        
KIAA04 SLQPPSPRFRRFSCLSLPSSWDYRCTPPAWVIFVFLVEMGFQHVGQADLGTPDLK     
       ::::  : :..::::: :::::::  ::  . : ..   :                    
KIAA16 SLQPLPPGFKQFSCLSYPSSWDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQ
           100       110       120       130       140       150   

KIAA16 PPEVLGLQV
           160  




83 residues in 1 query   sequences
1987422 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:40 2008 done: Thu Dec 18 15:23:40 2008
 Total Scan time:  0.180 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]