hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04180058/chunk_1/iprscan-20080502-04180058.nocrc
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Query sequence: KIAA0482
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00091                                                  48.8    7.3e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00091    1/2     250   317 ..     1    68 []    17.7      1.4
SM00091    2/2     390   456 ..     1    68 []    31.1  0.00016

Alignments of top-scoring domains:
SM00091: domain 1 of 2, from 250 to 317: score 17.7, E = 1.4
                   *->erlraileslpdgiivld.ldGrilyaNpaaeellGyspeeliGksl
                         +  l++ +++ ++++ l+Gri+y+++ a+ ll   ++   G+ +
    KIAA0482   250    ITSEYTLQNQDTFSVAVSfLTGRIVYISEQAAVLLRCKRDVFRGTRF 296  

                   lelihpedrlleevqe.lqrlla<-*
                   +el+ p+d     +  +  +++    
    KIAA0482   297 SELLAPQDV--GVFYGsTAPSRL    317  

SM00091: domain 2 of 2, from 390 to 456: score 31.1, E = 0.00016
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                       +  +i      +  ++++   + +++++a+ llGy p++l+G ++l
    KIAA0482   390    YEAPRIPPDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL 436  

                   elihpedrlleevqe.lqrlla<-*
                    ++hpedr  + +++ +++ l+   
    KIAA0482   437 LFLHPEDR--PLMLAiHKKILQ    456  

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