hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04180058/chunk_1/iprscan-20080502-04180058.nocrc
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Query sequence: KIAA0482
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08447.1.fs PAS fold                                        50.3    3.1e-13   1
PF08447.1.ls PAS fold                                        52.3    1.5e-12   1
PF00989.14.fs PAS fold                                        15.9    0.00025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08447.1.fs   1/1     412   507 ..     1   100 []    50.3  3.1e-13
PF08447.1.ls   1/1     412   507 ..     1   100 []    52.3  1.5e-12
PF00989.14.fs   1/1     415   504 ..    28   123 .]    15.9  0.00025

Alignments of top-scoring domains:
PF08447.1.fs: domain 1 of 1, from 412 to 507: score 50.3, E = 3.1e-13
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      +  +++r   +lGY p++llg +     l ++HP+Dr+++ + +++ 
    KIAA0482   412    FQDVDERAAPLLGYLPQDLLGAP----VLLFLHPEDRPLMLAIHKKI 454  

                   lklkkgepysg.eyRirrkdGeyrWveargrvirrDenGkpvrviGvavD
                   l l+++ p++++  R+  ++Gey+ ++++   + + ++ k+ +v+G +++
    KIAA0482   455 LQLAGQ-PFDHsPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKV 503  

                   ITer<-*
                    T+    
    KIAA0482   504 RTAP    507  

PF08447.1.ls: domain 1 of 1, from 412 to 507: score 52.3, E = 1.5e-12
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      +  +++r   +lGY p++llg +     l ++HP+Dr+++ + +++ 
    KIAA0482   412    FQDVDERAAPLLGYLPQDLLGAP----VLLFLHPEDRPLMLAIHKKI 454  

                   lklkkgepysg.eyRirrkdGeyrWveargrvirrDenGkpvrviGvavD
                   l l+++ p++++  R+  ++Gey+ ++++   + + ++ k+ +v+G +++
    KIAA0482   455 LQLAGQ-PFDHsPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKV 503  

                   ITer<-*
                    T+    
    KIAA0482   504 RTAP    507  

PF00989.14.fs: domain 1 of 1, from 415 to 504: score 15.9, E = 0.00025
                   *->vNaaaeellGlsreeviGkslldlipeeddaeclvaelllqaleqge
                      v + a+ llG+ +++++G ++l ++++ed+    ++++ ++ l+  +
    KIAA0482   415    VDERAAPLLGYLPQDLLGAPVLLFLHPEDRPL--MLAIHKKILQLAG 459  

                   e.rgvevsfrvsgqrflvrdgrpihvevraspvrdaggeil.gflgvlrD
                   ++++       s+ rf  r+g+++ ++  ++ +++++++    +lg+++ 
    KIAA0482   460 QpFD------HSPIRFCARNGEYVTMDTSWAGFVHPWSRKVaFVLGRHKV 503  

                   i<-*
                   +   
    KIAA0482   504 R    504  

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