# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00807.fasta.huge -Q ../query/KIAA0480.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0480, 1288 aa
 vs ./tmplib.23147 library

1986217 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.0924+/-0.00802; mu= -2.6891+/- 0.543
 mean_var=276.9953+/-66.092, 0's: 0 Z-trim: 6  B-trim: 2 in 1/39
 Lambda= 0.077062

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0291  ( 1024 res)   fh25236                    (1024)  276 45.1 6.9e-05


>>KIAA0291  ( 1024 res)   fh25236                         (1024 aa)
 initn: 396 init1: 271 opt: 276  Z-score: 179.6  bits: 45.1 E(): 6.9e-05
Smith-Waterman score: 340;  26.598% identity (58.312% similar) in 391 aa overlap (581-960:149-505)

              560       570       580       590       600       610
KIAA04 EVSSFKKEISAELYKDDFEVSSLLSLRKDSQSCRDKPQPMRSSTSGATSFGSNEEISECL
                                     :.   .:. .  . ..  : ::. .  : :
KIAA02 GQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPTAEGS-GSDAHSVESL
      120       130       140       150       160        170       

              620       630         640       650       660        
KIAA04 SEKSLSIHSNVHSDRLLELKSPTE--LMKSKERSDVEHEQQVTESPSLASVPTADELFDF
       . ..::.::.. .  :     : .  ...:. ..  :  .....:   .::  ...  :.
KIAA02 TAQNLSLHSGTATPPLTSRVIPLRESVLNSSVKTGNESGSNLSDS---GSVKRGEK--DL
       180       190       200       210       220          230    

      670       680       690       700       710       720        
KIAA04 HIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF
       ..:::::.:... :..:. :::.:::: : :::::.: :.:.:.  :  ::.:  : :.:
KIAA02 RLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF
            240       250       260       270       280       290  

      730       740       750       760       770       780        
KIAA04 APPQKISHIPENFDDYVDINEDEDCYSDERYQCYNQEQNDTEGPKDREKDVSEYFYEKSL
       :: .:. .:  .: .    .  .     .:.    .    :..:..           .:.
KIAA02 APIHKVIRI--GFPSTSPAKAKKT----KRMAMGVSAL--THSPSS-----------SSI
            300         310           320         330              

      790       800          810            820       830          
KIAA04 PSVNDIEASVNR--SRS-LKIETDN--VQDISGVL---EAHVHQQSSVDSQISSKE-NKD
        ::... .::.   ::: :  ::..  .. :::.    ::  ..:. ... .. .. .. 
KIAA02 SSVSSVASSVGGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERA
           340       350       360       370       380       390   

     840       850       860       870       880       890         
KIAA04 LISDATEKVSIAAEDDTLDNTFSEELEKQQQFTEEEDNLYAEASEKLCTPLLDLLTREKN
        .. :: ..  . .. .: ..  :.   . .   ..  : .:. .:  . : . : .:. 
KIAA02 EVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERR
           400       410       420       430       440       450   

     900       910       920       930       940       950         
KIAA04 QLEAQLKSSLNEEKKSKQQLEKISLLTDSLLKVFVKDTVNQLQQIKKTRDEKIQLSNQEL
       ..: .:.  ..::. .: .::        :  :  :. : ::..    :  .:.  .: :
KIAA02 KVE-DLQFRVEEESITKGDLE--------LTTVAEKSRVLQLEEELTLRRGEIEELQQCL
            460       470               480       490       500    

     960       970       980       990      1000      1010         
KIAA04 LGDDQKKVTPQDLSQNVEEQSPSISGCFLSSELEDEKEEISSPDMCPRPESPVFGASGQE
       :                                                           
KIAA02 LHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANE
          510       520       530       540       550       560    




1288 residues in 1 query   sequences
1986217 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:30 2008 done: Thu Dec 18 15:23:30 2008
 Total Scan time:  0.780 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]