hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04125689/chunk_1/iprscan-20080502-04125689.nocrc
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Query sequence: KIAA0479
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01467.16.fs Cytidylyltransferase                        94.3    1.1e-26   1
PF01467.16.ls Cytidylyltransferase                        96.3    8.6e-26   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF01467.16.fs   1/1      45   309 ..     1   185 []    94.3  1.1e-26
PF01467.16.ls   1/1      45   309 ..     1   185 []    96.3  8.6e-26

Alignments of top-scoring domains:
PF01467.16.fs: domain 1 of 1, from 45 to 309: score 94.3, E = 1.1e-26
                   *->lfgGtFDPiHlGHlrlleqAaelfdldeLvvgvpsdepphkd.kkkk
                      l++G+F+Pi++GH+ ++e+A++++ ++ +++++ +  +p++d+++k+
    KIAA0479    45    LACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDsYGKQ 91   

                   kpifsaeeRlemlelaikvdpnlevddfEikr.gisYTidTLkhlrelnp
                    +++s+ +Rl m++la++++++++vd++E+ +++++ T  +L+h+r l +
    KIAA0479    92 -GLVSSRHRLIMCQLAVQNSDWIRVDPWECYQdTWQTTCSVLEHHRDLMK 140  

                   ..................................................
                   + ++   ++ ++++ ++  ++++++++++  ++++  ++++  +  ++ +
    KIAA0479   141 rvtgcilsnvntpsmtpvigqpqnetpqpiyqnsnvatkptaakilgkvg 190  

                   ..................................dldlyfiigadalvsl
                   ++ ++    +++ ++ +  +++ + ++  + ++ +l++ +++g d+l+s+
    KIAA0479   191 eslsriccvrppverftfvdenanlgtvmryeeiELRILLLCGSDLLESF 240  

                   r.....gwrgiqelleevqivvvnrpldygletvfkpkewlsrvylreel
                     ++  +  +++ ++  + ivvv r+ +++   ++          +  +l
    KIAA0479   241 CipglwNEADMEVIVGDFGIVVVPRDAADTDRIMN----------HSSIL 280  

                   dkyplgkivipdlpyndtegiSSTeIRer<-*
                   +ky+ +++v++d   ++   +SST+ R +   
    KIAA0479   281 RKYKNNIMVVKDDINHPMSVVSSTKSRLA    309  

PF01467.16.ls: domain 1 of 1, from 45 to 309: score 96.3, E = 8.6e-26
                   *->lfgGtFDPiHlGHlrlleqAaelfdldeLvvgvpsdepphkd.kkkk
                      l++G+F+Pi++GH+ ++e+A++++ ++ +++++ +  +p++d+++k+
    KIAA0479    45    LACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDsYGKQ 91   

                   kpifsaeeRlemlelaikvdpnlevddfEikr.gisYTidTLkhlrelnp
                    +++s+ +Rl m++la++++++++vd++E+ +++++ T  +L+h+r l +
    KIAA0479    92 -GLVSSRHRLIMCQLAVQNSDWIRVDPWECYQdTWQTTCSVLEHHRDLMK 140  

                   ..................................................
                   + ++   ++ ++++ ++  ++++++++++  ++++  ++++  +  ++ +
    KIAA0479   141 rvtgcilsnvntpsmtpvigqpqnetpqpiyqnsnvatkptaakilgkvg 190  

                   ..................................dldlyfiigadalvsl
                   ++ ++    +++ ++ +  +++ + ++  + ++ +l++ +++g d+l+s+
    KIAA0479   191 eslsriccvrppverftfvdenanlgtvmryeeiELRILLLCGSDLLESF 240  

                   r.....gwrgiqelleevqivvvnrpldygletvfkpkewlsrvylreel
                     ++  +  +++ ++  + ivvv r+ +++   ++          +  +l
    KIAA0479   241 CipglwNEADMEVIVGDFGIVVVPRDAADTDRIMN----------HSSIL 280  

                   dkyplgkivipdlpyndtegiSSTeIRer<-*
                   +ky+ +++v++d   ++   +SST+ R +   
    KIAA0479   281 RKYKNNIMVVKDDINHPMSVVSSTKSRLA    309  

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