hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04111740/chunk_1/iprscan-20080502-04111740.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0478
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 296.1    2.6e-84  14
SM00225                                                  79.5    4.2e-19   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      38   131 ..     1   114 []    79.5  4.2e-19
SM00355      1/14    750   770 ..     1    23 []     6.3       61
SM00355      2/14    780   803 ..     1    23 []    15.7      5.3
SM00355      3/14    821   844 ..     1    23 []    21.3     0.14
SM00355      4/14    850   872 ..     1    23 []    24.7    0.013
SM00355      5/14    878   901 ..     1    23 []    21.3     0.14
SM00355      6/14    907   929 ..     1    23 []    27.9   0.0014
SM00355      7/14    935   958 ..     1    23 []    21.7      0.1
SM00355      8/14    964   987 ..     1    23 []    19.6     0.44
SM00355      9/14    992  1014 ..     1    23 []    27.6   0.0017
SM00355     10/14   1020  1042 ..     1    23 []    20.0     0.34
SM00355     11/14   1060  1083 ..     1    23 []    22.8    0.049
SM00355     12/14   1089  1112 ..     1    23 []    22.2    0.072
SM00355     13/14   1118  1141 ..     1    23 []    20.9     0.18
SM00355     14/14   1149  1172 ..     1    23 []    24.2    0.018

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 38 to 131: score 79.5, E = 4.2e-19
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD+t+ +g            f+a  Hk+vLaa    S  Fk+l+ ++
    KIAA0478    38    CDCTISIGT---------IYFRA--HKLVLAAA---SLLFKTLLDNt 70   

                   ..ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelAdf
                   ++i +d +    +vspe F +lL+ +Yt+kl + +    n  +++ lAd 
    KIAA0478    71 dtISIDAS----VVSPEEFALLLEMMYTgKLPVGKH---NFSKIISLADS 113  

                   ldSYGqip.lvelCeefllknl<-*
                   l    q+ +++  C++ l +     
    KIAA0478   114 L----QMFdVAVSCKNLLTSLV    131  

SM00355: domain 1 of 14, from 750 to 770: score 6.3, E = 61
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C+ksf+ +  Lk Hm+     
    KIAA0478   750    FICKA-CDKSFHFYcRLKVHMK--    770  

SM00355: domain 2 of 14, from 780 to 803: score 15.7, E = 5.3
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C++ C+++  sk++L +H+ + H   
    KIAA0478   780    VQCKE-CSETKDSKkELDKHQLeAH    803  

SM00355: domain 3 of 14, from 821 to 844: score 21.3, E = 0.14
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C++ Cg+ f +++ ++ H  + H   
    KIAA0478   821    VTCDL-CGREFAHAsGMQYHKLtEH    844  

SM00355: domain 4 of 14, from 850 to 872: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg +f   + Lk+H+r H   
    KIAA0478   850    FSCEE-CGAKFAANsTLKNHLRLH    872  

SM00355: domain 5 of 14, from 878 to 901: score 21.3, E = 0.14
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ C ++f++++aL  H +++H   
    KIAA0478   878    FMCKH-CLMTFTQAsALAYHTKkKH    901  

SM00355: domain 6 of 14, from 907 to 929: score 27.9, E = 0.0014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+ +f +  +L rH+r+H   
    KIAA0478   907    YACQY-CDAVFAQSiELSRHVRTH    929  

SM00355: domain 7 of 14, from 935 to 958: score 21.7, E = 0.1
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C   Cgk f++++ L  H+ + H   
    KIAA0478   935    YVCRD-CGKGFRQAnGLSIHLHtFH    958  

SM00355: domain 8 of 14, from 964 to 987: score 19.6, E = 0.44
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C +sf++ ++ ++H+ +vH   
    KIAA0478   964    YDCKK-CRMSFPTLqDHRKHIHeVH    987  

SM00355: domain 9 of 14, from 992 to 1014: score 27.6, E = 0.0017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp  Cgk fs ++ L+rHm +H   
    KIAA0478   992    HPCPT-CGKIFSAPsMLERHMVTH    1014 

SM00355: domain 10 of 14, from 1020 to 1042: score 20.0, E = 0.34
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C i C+k + + + L  H r+H   
    KIAA0478  1020    FSCGI-CNKAYQQLsGLWYHNRTH    1042 

SM00355: domain 11 of 14, from 1060 to 1083: score 22.8, E = 0.049
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C+  C+k+f++  + k+H++  H   
    KIAA0478  1060    LQCSS-CDKTFPNTiEHKKHIKaEH    1083 

SM00355: domain 12 of 14, from 1089 to 1112: score 22.2, E = 0.072
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C++ f+++  L+ H++ +H   
    KIAA0478  1089    HECDQ-CKELFPTPaLLQVHVKcQH    1112 

SM00355: domain 13 of 14, from 1118 to 1141: score 20.9, E = 0.18
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C  +f+ ++aL++H+ + H   
    KIAA0478  1118    FRCLY-CAATFRFPgALQHHVTtEH    1141 

SM00355: domain 14 of 14, from 1149 to 1172: score 24.2, E = 0.018
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ Cg+ f+s+ +L  H+ + H   
    KIAA0478  1149    FPCEL-CGELFTSQaQLDSHLEsEH    1172 

//