hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04111740/chunk_1/iprscan-20080502-04111740.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0478 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 297.3 2.6e-86 14 PF00096.16.fs Zinc finger, C2H2 type 269.8 5.2e-78 14 PF00651.21.fs BTB/POZ domain 73.8 4.3e-20 1 PF00651.21.ls BTB/POZ domain 75.5 1.5e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 28 131 .. 1 135 [] 75.5 1.5e-19 PF00651.21.fs 1/1 28 131 .. 1 135 [] 73.8 4.3e-20 PF00096.16.ls 3/14 821 844 .. 1 24 [] 19.7 0.0095 PF00096.16.fs 4/14 850 872 .. 1 24 [] 27.1 1.6e-05 PF00096.16.ls 4/14 850 872 .. 1 24 [] 29.1 1.4e-05 PF00096.16.ls 5/14 878 901 .. 1 24 [] 23.2 0.00087 PF00096.16.ls 6/14 907 929 .. 1 24 [] 29.3 1.2e-05 PF00096.16.fs 6/14 907 929 .. 1 24 [] 27.3 1.4e-05 PF00096.16.fs 7/14 935 958 .. 1 24 [] 25.6 3.9e-05 PF00096.16.ls 7/14 935 958 .. 1 24 [] 27.6 4.1e-05 PF00096.16.fs 9/14 992 1014 .. 1 24 [] 29.1 5.3e-06 PF00096.16.ls 9/14 992 1014 .. 1 24 [] 31.1 3.7e-06 PF00096.16.ls 10/14 1020 1042 .. 1 24 [] 22.7 0.0012 PF00096.16.ls 13/14 1118 1141 .. 1 24 [] 21.0 0.0039 PF00096.16.fs 14/14 1149 1172 .. 1 24 [] 22.5 0.00023 PF00096.16.ls 14/14 1149 1172 .. 1 24 [] 24.5 0.00035 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 28 to 131: score 75.5, E = 1.5e-19 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l l k+ ++cD+t+ +g + f+AHK+vLaa+S Fk+l KIAA0478 28 LYTLCKEQQFCDCTISIG--------TIYFRAHKLVLAAASLLFKTL 66 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks + ++ + +s i+ + vspe+f +lLe +Ytg+l++ KIAA0478 67 LDNT-------DTIS----IDASVVSPEEFALLLEMMYTGKLPVG----- 100 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + n +++++A d lq+ ++ C + l KIAA0478 101 ------KHNFSKIISLA-DSLQMFDVAVSCKNLLTSLV 131 PF00651.21.fs: domain 1 of 1, from 28 to 131: score 73.8, E = 4.3e-20 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l l k+ ++cD+t+ +g + f+AHK+vLaa+S Fk+l KIAA0478 28 LYTLCKEQQFCDCTISIG--------TIYFRAHKLVLAAASLLFKTL 66 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks + ++ + +s i+ + vspe+f +lLe +Ytg+l++ KIAA0478 67 LDNT-------DTIS----IDASVVSPEEFALLLEMMYTGKLPVG----- 100 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + n +++++A d lq+ ++ C + l KIAA0478 101 ------KHNFSKIISLA-DSLQMFDVAVSCKNLLTSLV 131 PF00096.16.ls: domain 3 of 14, from 821 to 844: score 19.7, E = 0.0095 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ Cg+ F + s ++ H+ t+H KIAA0478 821 VTCD-LCGREFAHASGMQYHKLTeH 844 PF00096.16.fs: domain 4 of 14, from 850 to 872: score 27.1, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg +F +s+Lk+Hlr H KIAA0478 850 FSCE-ECGAKFAANSTLKNHLRLH 872 PF00096.16.ls: domain 4 of 14, from 850 to 872: score 29.1, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg +F +s+Lk+Hlr H KIAA0478 850 FSCE-ECGAKFAANSTLKNHLRLH 872 PF00096.16.ls: domain 5 of 14, from 878 to 901: score 23.2, E = 0.00087 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C +F++ s L H +++H KIAA0478 878 FMCK-HCLMTFTQASALAYHTKKkH 901 PF00096.16.ls: domain 6 of 14, from 907 to 929: score 29.3, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +F ++ +L rH rtH KIAA0478 907 YACQ-YCDAVFAQSIELSRHVRTH 929 PF00096.16.fs: domain 6 of 14, from 907 to 929: score 27.3, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +F ++ +L rH rtH KIAA0478 907 YACQ-YCDAVFAQSIELSRHVRTH 929 PF00096.16.fs: domain 7 of 14, from 935 to 958: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C dCgk F++ L Hl t H KIAA0478 935 YVCR-DCGKGFRQANGLSIHLHTfH 958 PF00096.16.ls: domain 7 of 14, from 935 to 958: score 27.6, E = 4.1e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C dCgk F++ L Hl t H KIAA0478 935 YVCR-DCGKGFRQANGLSIHLHTfH 958 PF00096.16.fs: domain 9 of 14, from 992 to 1014: score 29.1, E = 5.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cgk Fs +s L+rH+ tH KIAA0478 992 HPCP-TCGKIFSAPSMLERHMVTH 1014 PF00096.16.ls: domain 9 of 14, from 992 to 1014: score 31.1, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cgk Fs +s L+rH+ tH KIAA0478 992 HPCP-TCGKIFSAPSMLERHMVTH 1014 PF00096.16.ls: domain 10 of 14, from 1020 to 1042: score 22.7, E = 0.0012 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+k++ + s L H rtH KIAA0478 1020 FSCG-ICNKAYQQLSGLWYHNRTH 1042 PF00096.16.ls: domain 13 of 14, from 1118 to 1141: score 21.0, E = 0.0039 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C +C +F+ ++ L++H t+H KIAA0478 1118 FRCL-YCAATFRFPGALQHHVTTeH 1141 PF00096.16.fs: domain 14 of 14, from 1149 to 1172: score 22.5, E = 0.00023 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ Cg+ F+++++L +Hl ++H KIAA0478 1149 FPCE-LCGELFTSQAQLDSHLESeH 1172 PF00096.16.ls: domain 14 of 14, from 1149 to 1172: score 24.5, E = 0.00035 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ Cg+ F+++++L +Hl ++H KIAA0478 1149 FPCE-LCGELFTSQAQLDSHLESeH 1172 //