hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04062181/chunk_1/iprscan-20080502-04062181.nocrc
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Query sequence: KIAA0475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06702.3.ls Protein of unknown function (DUF1193)          587.7     1e-173   1
PF06702.3.fs Protein of unknown function (DUF1193)          585.8   3.8e-173   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06702.3.fs   1/1     204   431 ..     1   243 []   585.8 3.8e-173
PF06702.3.ls   1/1     204   431 ..     1   243 []   587.7   1e-173

Alignments of top-scoring domains:
PF06702.3.fs: domain 1 of 1, from 204 to 431: score 585.8, E = 3.8e-173
                   *->EIyevakekkLqkTFFvsPDEDGanNlCFfGKCsYYCdTehAvCGdP
                      EI++va+e++L++  F+++    +nN+CF+GKC YYC++++++C+d+
    KIAA0475   204    EIKPVATEQLLST--FLTV----GNNTCFYGKC-YYCRETEPACADG 243  

                   RDmlEGSlaaFLPdlslapRkkwRsPWrRtYhkrKkVAeWEvDmnYCTdk
                    D++EGS++++LPd  ++p++k+R+PW+RtY+++K+ A+WE+D++YC d+
    KIAA0475   244 -DIMEGSVTLWLPD--VWPLQKHRHPWGRTYREGKL-ARWEYDESYC-DA 288  

                   VKqkpPYdsGrRLLDliDmaiFDyLIGNmDRHHYEtFekFgdLesflIHL
                   VK+++PYdsG+RLLD+iD+a+FDyLIGN+DRHHYE+F+++++ +s+lI+L
    KIAA0475   289 VKKTSPYDSGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEG-ASMLILL 337  

                   DNGRgFGrpshDElSILAPLyQCClIRkSTwlrLqllangpkvLsealke
                   DN+++FG+ps+DE+SILAPLyQCC+IR+STw+rL++l+ng  vL++alk+
    KIAA0475   338 DNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYLKNG--VLKSALKS 385  

                   SLsqDpvsPVLtdpHleAlDRRLlivLatVedCidkeGvasVlveD<-*
                   ++++Dp+sPVL+dpHl+A+D+RLl+vLatV++C+d++G+++VlveD   
    KIAA0475   386 AMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQFGMDTVLVED    431  

PF06702.3.ls: domain 1 of 1, from 204 to 431: score 587.7, E = 1e-173
                   *->EIyevakekkLqkTFFvsPDEDGanNlCFfGKCsYYCdTehAvCGdP
                      EI++va+e++L++  F+++    +nN+CF+GKC YYC++++++C+d+
    KIAA0475   204    EIKPVATEQLLST--FLTV----GNNTCFYGKC-YYCRETEPACADG 243  

                   RDmlEGSlaaFLPdlslapRkkwRsPWrRtYhkrKkVAeWEvDmnYCTdk
                    D++EGS++++LPd  ++p++k+R+PW+RtY+++K+ A+WE+D++YC d+
    KIAA0475   244 -DIMEGSVTLWLPD--VWPLQKHRHPWGRTYREGKL-ARWEYDESYC-DA 288  

                   VKqkpPYdsGrRLLDliDmaiFDyLIGNmDRHHYEtFekFgdLesflIHL
                   VK+++PYdsG+RLLD+iD+a+FDyLIGN+DRHHYE+F+++++ +s+lI+L
    KIAA0475   289 VKKTSPYDSGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEG-ASMLILL 337  

                   DNGRgFGrpshDElSILAPLyQCClIRkSTwlrLqllangpkvLsealke
                   DN+++FG+ps+DE+SILAPLyQCC+IR+STw+rL++l+ng  vL++alk+
    KIAA0475   338 DNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYLKNG--VLKSALKS 385  

                   SLsqDpvsPVLtdpHleAlDRRLlivLatVedCidkeGvasVlveD<-*
                   ++++Dp+sPVL+dpHl+A+D+RLl+vLatV++C+d++G+++VlveD   
    KIAA0475   386 AMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQFGMDTVLVED    431  

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