hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04012917/chunk_1/iprscan-20080502-04012917.nocrc
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Query sequence: KIAA0472
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 137.9      1e-36   1
SM00219                                                  67.3    1.9e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      88   342 ..     1   280 []    67.3  1.9e-15
SM00220    1/1      88   342 ..     1   231 []   137.9    1e-36

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 88 to 342: score 67.3, E = 1.9e-15
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                       +lg++LG+G++G+Vy++   +++ ++A K++ +  +++  ++  E 
    KIAA0472    88    PKLGQELGRGQYGVVYLCDNWgghFPCALKSVVPPDekhWNDLALEF 134  

                   kiMkklGgkHpNiVkLlGvcte....egrrFmevePlmivmEymegGdLl
                     M++l +kH+ +V L+G +++ + ++       +    v+  me    +
    KIAA0472   135 HYMRSL-PKHERLVDLHGSVIDynygG-------GSSIAVLLIMERLHRD 176  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                    y   + + l+l++ l++Al++ +G ++L+s+++vHRD+   N+L+++++
    KIAA0472   177 LYTGLKAG-LTLETRLQIALDVVEGIRFLHSQGLVHRDIKLKNVLLDKQN 225  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   ++KI+D G ++           +  ++      g    Pi  mAPE + +
    KIAA0472   226 RAKITDLGFCKPEAMM------SGSIV------GT---PIH-MAPELF-T 258  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqq.fmsneevleylkkGyR
                   gk+    DV++FG+l W i++   + ++   +++  s +++ +++++G R
    KIAA0472   259 GKYDNSVDVYAFGILFWYICSGSVKLPEA--FErCASKDHLWNNVRRGAR 306  

                   lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   +++ +           +e  +lM+ CW+ dP +RP    +   l   
    KIAA0472   307 PERLPV--------FDEECWQLMEACWDGDPLKRPLLGIVQPML    342  

SM00220: domain 1 of 1, from 88 to 342: score 137.9, E = 1e-36
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                       +l+++lG+G +G+Vyl+ + + +  +A+K + ++++++ +++  E 
    KIAA0472    88    PKLGQELGRGQYGVVYLCDNWGGHFPCALKSVVppdekhwNDLALEF 134  

                   kiLkk..dHPNIVkLydvfed........dklylVmEyceGdlGdLfdll
                     +++ ++H+ +V L+++  d + +++++  + l+mE +     dL++ l
    KIAA0472   135 HYMRSlpKHERLVDLHGSVIDynygggssIAVLLIMERLHR---DLYTGL 181  

                   kkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds
                   k          l+ ++   ++  +++++ +LHsqg +HRD+K  N+LLd+
    KIAA0472   182 KAG--------LTLeTRLQIALDVVEGIRFLHSQGLVHRDIKLKNVLLDK 223  

                   ..hvKlaDFGlArql....ttfvGTpeYmAPEvl..gYgkpavDiWSlGc
                   +++ K++D G+++     + ++vGTp  mAPE+++++Y+  +vD++++G+
    KIAA0472   224 qnRAKITDLGFCKPEammsGSIVGTPIHMAPELFtgKYDN-SVDVYAFGI 272  

                   ilyElltGkpPFp.......qldlifkkig...........SpeakdLik
                   +++  ++G    p+  ++    d ++++++++ ++++ +  ++e+++L++
    KIAA0472   273 LFWYICSGSVKLPeafercaSKDHLWNNVRrgarperlpvfDEECWQLME 322  

                   klLvkdPekRltaeaLedeldikaHPff<-*
                    +++ dP kR+   + +        P +   
    KIAA0472   323 ACWDGDPLKRPLLGIVQ--------PML    342  

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