hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04012917/chunk_1/iprscan-20080502-04012917.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0472 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 137.9 1e-36 1 SM00219 67.3 1.9e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 88 342 .. 1 280 [] 67.3 1.9e-15 SM00220 1/1 88 342 .. 1 231 [] 137.9 1e-36 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 88 to 342: score 67.3, E = 1.9e-15 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa +lg++LG+G++G+Vy++ +++ ++A K++ + +++ ++ E KIAA0472 88 PKLGQELGRGQYGVVYLCDNWgghFPCALKSVVPPDekhWNDLALEF 134 kiMkklGgkHpNiVkLlGvcte....egrrFmevePlmivmEymegGdLl M++l +kH+ +V L+G +++ + ++ + v+ me + KIAA0472 135 HYMRSL-PKHERLVDLHGSVIDynygG-------GSSIAVLLIMERLHRD 176 dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk y + + l+l++ l++Al++ +G ++L+s+++vHRD+ N+L+++++ KIAA0472 177 LYTGLKAG-LTLETRLQIALDVVEGIRFLHSQGLVHRDIKLKNVLLDKQN 225 vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd ++KI+D G ++ + ++ g Pi mAPE + + KIAA0472 226 RAKITDLGFCKPEAMM------SGSIV------GT---PIH-MAPELF-T 258 gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqq.fmsneevleylkkGyR gk+ DV++FG+l W i++ + ++ +++ s +++ +++++G R KIAA0472 259 GKYDNSVDVYAFGILFWYICSGSVKLPEA--FErCASKDHLWNNVRRGAR 306 lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-* +++ + +e +lM+ CW+ dP +RP + l KIAA0472 307 PERLPV--------FDEECWQLMEACWDGDPLKRPLLGIVQPML 342 SM00220: domain 1 of 1, from 88 to 342: score 137.9, E = 1e-36 *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi +l+++lG+G +G+Vyl+ + + + +A+K + ++++++ +++ E KIAA0472 88 PKLGQELGRGQYGVVYLCDNWGGHFPCALKSVVppdekhwNDLALEF 134 kiLkk..dHPNIVkLydvfed........dklylVmEyceGdlGdLfdll +++ ++H+ +V L+++ d + +++++ + l+mE + dL++ l KIAA0472 135 HYMRSlpKHERLVDLHGSVIDynygggssIAVLLIMERLHR---DLYTGL 181 kkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds k l+ ++ ++ +++++ +LHsqg +HRD+K N+LLd+ KIAA0472 182 KAG--------LTLeTRLQIALDVVEGIRFLHSQGLVHRDIKLKNVLLDK 223 ..hvKlaDFGlArql....ttfvGTpeYmAPEvl..gYgkpavDiWSlGc +++ K++D G+++ + ++vGTp mAPE+++++Y+ +vD++++G+ KIAA0472 224 qnRAKITDLGFCKPEammsGSIVGTPIHMAPELFtgKYDN-SVDVYAFGI 272 ilyElltGkpPFp.......qldlifkkig...........SpeakdLik +++ ++G p+ ++ d ++++++++ ++++ + ++e+++L++ KIAA0472 273 LFWYICSGSVKLPeafercaSKDHLWNNVRrgarperlpvfDEECWQLME 322 klLvkdPekRltaeaLedeldikaHPff<-* +++ dP kR+ + + P + KIAA0472 323 ACWDGDPLKRPLLGIVQ--------PML 342 //