hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03545273/chunk_1/iprscan-20080502-03545273.nocrc
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Query sequence: KIAA0468
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01034.10.fs Syndecan domain                                506.4   3.1e-149   1
PF01034.10.ls Syndecan domain                                483.1   3.2e-142   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01034.10.ls   1/1      19   408 ..     1   438 []   483.1 3.2e-142
PF01034.10.fs   1/1      55   408 ..    64   438 .]   506.4 3.1e-149

Alignments of top-scoring domains:
PF01034.10.ls: domain 1 of 1, from 19 to 408: score 483.1, E = 3.2e-142
                   *->rkllwlalllllLslqsalpQiwaanyRLnterPvDlegSGDDdsFd
                      r+l  l l + +  + s   Q+  +                      
    KIAA0468    19    RGLGDLILMAIAYLGSSCPSQPPSSL--------------------- 44   

                   DdeLDDnySGSGssGy.fEqeEtgsdqapsrlkDvelltptptapkPvTl
                           S+S  ++ +fEqe +g ++a+++ +Dv+l+ +t++a++P+T 
    KIAA0468    45 ------ALSLSP-TPSdFEQE-SGIETAMRFSPDVALAVSTTPAVLPTTN 86   

                   vQPvdtPfEeflsedtrPeqaTsvpkvTkvsevneegSwkqttasTtsst
                   +QPv tPfEe++se +  e+aTs++ vT   ev+ee+S+ +tt+sTt  t
    KIAA0468    87 IQPVGTPFEELPSERPTLEPATSPLVVT---EVPEEPSQRATTVSTTMAT 133  

                   haattsvevhhsTlPagaatteatttehptihatvatvrtTsvqrllPpv
                   +aat +++++ +T+Pa+ at +++t+ +p+ +at+a  rtT+v+rllP++
    KIAA0468   134 TAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLP 183  

                   VtvsatpsaTakdtHHHHekeaTTvpttttqlptphqvststakPtslqk
                   +t+ at++aT++++    ++++TT + ++t++ptp++vst+t++P++l++
    KIAA0468   184 LTTVATARATTPEA----PSPPTTAAVLDTEAPTPRLVSTATSRPRALPR 229  

                   pitshHehedtepgthetstptapgqaevstvnhpgrletggdsttevpa
                   p+t++ e++  e++t +++++tapg++ev+++++p+  +t+  +++evp+
    KIAA0468   230 PATTQ-EPDIPERST-LPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPV 277  

                   sdgLvDLtpSgdlEiqeeDviPqpEestepdltnEtsaentaaaapep..
                   s+g     pSgd+E+  e      Ee+t+pd++nE++a+ +aaa+ + ++
    KIAA0468   278 SGG-----PSGDFELP-E------EETTQPDTANEVVAVGGAAAKASSpp 315  

                   ..lqrgqpPdiGLIDNtVdsGaSaAqlsqkniLeRKEVLaAVIaGGvVGl
                   ++l++g++P+ GL DN++dsG+SaAql+qk+iLeRKEVL+AVI+GGvVG+
    KIAA0468   316 gtLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGA 365  

                   iFAvfLVgfllYRMKKKDEGSYsLEEPKQAngYgsYQKPtkqTeEF<-*
                   +FA+fLV++l+YRMKKKDEGSY+LEEPKQA+  ++YQKP+kq eEF   
    KIAA0468   366 LFAAFLVTLLIYRMKKKDEGSYTLEEPKQAS--VTYQKPDKQ-EEF    408  

PF01034.10.fs: domain 1 of 1, from 55 to 408: score 506.4, E = 3.1e-149
                   *->fEqeEtgsdqapsrlkDvelltptptapkPvTlvQPvdtPfEeflse
                      fEqe +g ++a+++ +Dv+l+ +t++a++P+T +QPv tPfEe++se
    KIAA0468    55    FEQE-SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSE 100  

                   dtrPeqaTsvpkvTkvsevneegSwkqttasTtssthaattsvevhhsTl
                    +  e+aTs++ vT   ev+ee+S+ +tt+sTt  t+aat +++++ +T+
    KIAA0468   101 RPTLEPATSPLVVT---EVPEEPSQRATTVSTTMATTAATSTGDPTVATV 147  

                   PagaatteatttehptihatvatvrtTsvqrllPpvVtvsatpsaTakdt
                   Pa+ at +++t+ +p+ +at+a  rtT+v+rllP+++t+ at++aT++++
    KIAA0468   148 PATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEA 197  

                   HHHHekeaTTvpttttqlptphqvststakPtslqkpitshHehedtepg
                       ++++TT + ++t++ptp++vst+t++P++l++p+t++ e++  e++
    KIAA0468   198 ----PSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQ-EPDIPERS 242  

                   thetstptapgqaevstvnhpgrletggdsttevpasdgLvDLtpSgdlE
                   t +++++tapg++ev+++++p+  +t+  +++evp+s+g     pSgd+E
    KIAA0468   243 T-LPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGG-----PSGDFE 286  

                   iqeeDviPqpEestepdltnEtsaentaaaapep....lqrgqpPdiGLI
                   +  e      Ee+t+pd++nE++a+ +aaa+ + ++++l++g++P+ GL 
    KIAA0468   287 LP-E------EETTQPDTANEVVAVGGAAAKASSppgtLPKGARPGPGLL 329  

                   DNtVdsGaSaAqlsqkniLeRKEVLaAVIaGGvVGliFAvfLVgfllYRM
                   DN++dsG+SaAql+qk+iLeRKEVL+AVI+GGvVG++FA+fLV++l+YRM
    KIAA0468   330 DNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRM 379  

                   KKKDEGSYsLEEPKQAngYgsYQKPtkqTeEF<-*
                   KKKDEGSY+LEEPKQA+  ++YQKP+kq eEF   
    KIAA0468   380 KKKDEGSYTLEEPKQAS--VTYQKPDKQ-EEF    408  

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