# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg01596.fasta.nr -Q ../query/KIAA0468.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0468, 410 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7809945 sequences Expectation_n fit: rho(ln(x))= 6.8356+/-0.000205; mu= 3.4784+/- 0.011 mean_var=136.3859+/-26.061, 0's: 31 Z-trim: 76 B-trim: 206 in 1/67 Lambda= 0.109822 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|56206270|emb|CAI22245.1| syndecan 3 [Homo sapie ( 384) 2444 398.3 1.5e-108 gi|114152873|sp|O75056.2|SDC3_HUMAN RecName: Full= ( 442) 2259 369.1 1.1e-99 gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [H ( 442) 2253 368.1 2.2e-99 gi|114555293|ref|XP_001149044.1| PREDICTED: simila ( 403) 2229 364.3 2.8e-98 gi|119628042|gb|EAX07637.1| syndecan 3 (N-syndecan ( 346) 2197 359.2 8.5e-97 gi|194380786|dbj|BAG58546.1| unnamed protein produ ( 346) 2191 358.2 1.6e-96 gi|109000859|ref|XP_001092729.1| PREDICTED: simila ( 498) 2191 358.3 2.2e-96 gi|194207786|ref|XP_001500236.2| PREDICTED: simila ( 403) 2098 343.5 5e-92 gi|119888633|ref|XP_875616.2| PREDICTED: similar t ( 442) 2085 341.5 2.2e-91 gi|73950489|ref|XP_544449.2| PREDICTED: similar to ( 591) 2067 338.8 2e-90 gi|123981994|gb|ABM82826.1| syndecan 3 (N-syndecan ( 370) 2027 332.2 1.1e-88 gi|149024102|gb|EDL80599.1| syndecan 3 [Rattus nor ( 442) 1875 308.2 2.3e-81 gi|2507439|sp|P33671.3|SDC3_RAT RecName: Full=Synd ( 442) 1870 307.4 4e-81 gi|114152874|sp|Q64519.2|SDC3_MOUSE RecName: Full= ( 442) 1868 307.1 5e-81 gi|1399585|gb|AAB03284.1| syndecan-3 ( 442) 1846 303.6 5.6e-80 gi|1334236|emb|CAA44848.1| neuroglycan [Rattus rat ( 353) 1827 300.5 3.8e-79 gi|1399583|gb|AAB03283.1| syndecan-3 ( 442) 1817 299.0 1.4e-78 gi|126330542|ref|XP_001381745.1| PREDICTED: simila ( 455) 1169 196.4 1.1e-47 gi|74211964|dbj|BAE29322.1| unnamed protein produc ( 186) 1096 184.5 1.7e-44 gi|1351050|sp|P26261.2|SDC3_CHICK RecName: Full=Sy ( 405) 914 155.9 1.5e-35 gi|57116395|gb|AAW33686.1| syndecan-3 [Meleagris g ( 403) 895 152.9 1.2e-34 gi|2547268|gb|AAB81326.1| syndecan-3 [Xenopus laev ( 390) 690 120.4 7e-25 gi|159572670|emb|CAP19380.1| syndecan 3 [Mus muscu ( 148) 623 109.5 5.3e-22 gi|161612024|gb|AAI55982.1| Sdc3 protein [Xenopus ( 362) 529 94.9 3.2e-17 gi|189532662|ref|XP_001919756.1| PREDICTED: hypoth ( 404) 461 84.2 6e-14 gi|47216146|emb|CAG10020.1| unnamed protein produc ( 289) 389 72.6 1.3e-10 gi|118089042|ref|XP_419972.2| PREDICTED: hypotheti ( 308) 381 71.4 3.2e-10 gi|57324|emb|CAA43058.1| syndecan [Rattus norvegic ( 279) 377 70.7 4.6e-10 gi|122132416|sp|Q08DZ5.1|SDC1_BOVIN RecName: Full= ( 311) 377 70.8 5e-10 gi|464744|sp|P26260.2|SDC1_RAT RecName: Full=Synde ( 313) 377 70.8 5e-10 gi|126345131|ref|XP_001364964.1| PREDICTED: simila ( 251) 374 70.2 5.9e-10 gi|149606353|ref|XP_001521801.1| PREDICTED: simila ( 169) 358 67.5 2.5e-09 gi|74207636|dbj|BAE40064.1| unnamed protein produc ( 311) 357 67.6 4.5e-09 gi|135156|sp|P18828.1|SDC1_MOUSE RecName: Full=Syn ( 311) 352 66.8 7.8e-09 gi|1351048|sp|P47951.1|SDC1_CRIGR RecName: Full=Sy ( 309) 345 65.7 1.7e-08 gi|666052|emb|CAA88235.1| syndecan-1 [Homo sapiens ( 288) 343 65.3 2e-08 gi|135155|sp|P18827.2|SDC1_HUMAN RecName: Full=Syn ( 310) 343 65.4 2.1e-08 gi|338634|gb|AAA60605.1| syndecan ( 310) 343 65.4 2.1e-08 gi|194220934|ref|XP_001501792.2| PREDICTED: simila ( 452) 343 65.5 2.8e-08 gi|464743|sp|P34740.1|SDC1_MESAU RecName: Full=Syn ( 309) 340 64.9 2.9e-08 gi|148665996|gb|EDK98412.1| syndecan 1, isoform CR ( 258) 338 64.5 3.1e-08 gi|5354039|gb|AAD42345.1|AF134897_1 syndecan-1 [Mu ( 267) 337 64.4 3.6e-08 gi|62702225|gb|AAX93151.1| unknown [Homo sapiens] ( 310) 338 64.6 3.6e-08 gi|149580560|ref|XP_001517354.1| PREDICTED: simila ( 296) 337 64.4 3.9e-08 gi|73980589|ref|XP_540099.2| PREDICTED: similar to ( 446) 334 64.1 7.4e-08 gi|14250612|gb|AAH08765.1| Syndecan 1 [Homo sapien ( 310) 331 63.5 7.8e-08 gi|109102131|ref|XP_001095194.1| PREDICTED: syndec ( 310) 331 63.5 7.8e-08 gi|30583913|gb|AAP36205.1| Homo sapiens syndecan 1 ( 311) 331 63.5 7.8e-08 gi|109624913|emb|CAJ51323.1| probable cell surface (1358) 318 61.9 9.9e-07 gi|114576379|ref|XP_001140545.1| PREDICTED: simila ( 241) 303 58.9 1.4e-06 >>gi|56206270|emb|CAI22245.1| syndecan 3 [Homo sapiens] (384 aa) initn: 2444 init1: 2444 opt: 2444 Z-score: 2104.9 bits: 398.3 E(): 1.5e-108 Smith-Waterman score: 2444; 100.000% identity (100.000% similar) in 384 aa overlap (27-410:1-384) 10 20 30 40 50 60 KIAA04 LAVPSSFLSSFLGKLGKERGLGDLILMAIAYLGSSCPSQPPSSLALSLSPTPSDFEQESG :::::::::::::::::::::::::::::::::: gi|562 MAIAYLGSSCPSQPPSSLALSLSPTPSDFEQESG 10 20 30 70 80 90 100 110 120 KIAA04 IETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 IETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEP 40 50 60 70 80 90 130 140 150 160 170 180 KIAA04 SQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 SQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLL 100 110 120 130 140 150 190 200 210 220 230 240 KIAA04 PLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 PLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPE 160 170 180 190 200 210 250 260 270 280 290 300 KIAA04 RSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 RSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA04 VVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 VVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVG 280 290 300 310 320 330 370 380 390 400 410 KIAA04 GVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 GVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 340 350 360 370 380 >>gi|114152873|sp|O75056.2|SDC3_HUMAN RecName: Full=Synd (442 aa) initn: 2258 init1: 2258 opt: 2259 Z-score: 1945.7 bits: 369.1 E(): 1.1e-99 Smith-Waterman score: 2259; 89.346% identity (92.252% similar) in 413 aa overlap (1-410:30-442) 10 20 30 KIAA04 LAVPSSFLSSFLGKL-GKERGLGDLILMAIA : .: .: . :. : .: .. . . gi|114 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD 10 20 30 40 50 60 40 50 60 70 80 KIAA04 YLGSSCP-SQPPSSLALSLSPTPSD-FEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ ::. : : . : : . : :::::::::::::::::::::::::::::::::: gi|114 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ 70 80 90 100 110 120 90 100 110 120 130 140 KIAA04 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP 130 140 150 160 170 180 150 160 170 180 190 200 KIAA04 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD 190 200 210 220 230 240 210 220 230 240 250 260 KIAA04 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT 250 260 270 280 290 300 270 280 290 300 310 320 KIAA04 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL 310 320 330 340 350 360 330 340 350 360 370 380 KIAA04 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT 370 380 390 400 410 420 390 400 410 KIAA04 LEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::: gi|114 LEEPKQASVTYQKPDKQEEFYA 430 440 >>gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [Homo (442 aa) initn: 2252 init1: 2252 opt: 2253 Z-score: 1940.6 bits: 368.1 E(): 2.2e-99 Smith-Waterman score: 2253; 89.104% identity (92.252% similar) in 413 aa overlap (1-410:30-442) 10 20 30 KIAA04 LAVPSSFLSSFLGKL-GKERGLGDLILMAIA : .: .: . :. : .: .. . . gi|138 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD 10 20 30 40 50 60 40 50 60 70 80 KIAA04 YLGSSCP-SQPPSSLALSLSPTPSD-FEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ ::. : : . : : . : :::::::::::::::::::::::::::::::::: gi|138 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ 70 80 90 100 110 120 90 100 110 120 130 140 KIAA04 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP 130 140 150 160 170 180 150 160 170 180 190 200 KIAA04 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD 190 200 210 220 230 240 210 220 230 240 250 260 KIAA04 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT 250 260 270 280 290 300 270 280 290 300 310 320 KIAA04 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 IRNEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL 310 320 330 340 350 360 330 340 350 360 370 380 KIAA04 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT 370 380 390 400 410 420 390 400 410 KIAA04 LEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::: gi|138 LEEPKQASVTYQKPDKQEEFYA 430 440 >>gi|114555293|ref|XP_001149044.1| PREDICTED: similar to (403 aa) initn: 2229 init1: 2229 opt: 2229 Z-score: 1920.6 bits: 364.3 E(): 2.8e-98 Smith-Waterman score: 2229; 99.157% identity (99.438% similar) in 356 aa overlap (55-410:48-403) 30 40 50 60 70 80 KIAA04 ILMAIAYLGSSCPSQPPSSLALSLSPTPSDFEQESGIETAMRFSPDVALAVSTTPAVLPT :::::::::::::::::::::::::::::: gi|114 RPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPT 20 30 40 50 60 70 90 100 110 120 130 140 KIAA04 TNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: gi|114 TNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGALTV 80 90 100 110 120 130 150 160 170 180 190 200 KIAA04 ATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTA ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ATVPATVATAAPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTA 140 150 160 170 180 190 210 220 230 240 250 260 KIAA04 AVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPET 200 210 220 230 240 250 270 280 290 300 310 320 KIAA04 FLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARP 260 270 280 290 300 310 330 340 350 360 370 380 KIAA04 GPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDE 320 330 340 350 360 370 390 400 410 KIAA04 GSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::: gi|114 GSYTLEEPKQASVTYQKPDKQEEFYA 380 390 400 >>gi|119628042|gb|EAX07637.1| syndecan 3 (N-syndecan), i (346 aa) initn: 2197 init1: 2197 opt: 2197 Z-score: 1894.0 bits: 359.2 E(): 8.5e-97 Smith-Waterman score: 2197; 100.000% identity (100.000% similar) in 346 aa overlap (65-410:1-346) 40 50 60 70 80 90 KIAA04 SCPSQPPSSLALSLSPTPSDFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPF :::::::::::::::::::::::::::::: gi|119 MRFSPDVALAVSTTPAVLPTTNIQPVGTPF 10 20 30 100 110 120 130 140 150 KIAA04 EELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATA 40 50 60 70 80 90 160 170 180 190 200 210 KIAA04 TPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTP 100 110 120 130 140 150 220 230 240 250 260 270 KIAA04 RLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPE 160 170 180 190 200 210 280 290 300 310 320 330 KIAA04 VPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAID 220 230 240 250 260 270 340 350 360 370 380 390 KIAA04 SGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ 280 290 300 310 320 330 400 410 KIAA04 ASVTYQKPDKQEEFYA :::::::::::::::: gi|119 ASVTYQKPDKQEEFYA 340 >>gi|194380786|dbj|BAG58546.1| unnamed protein product [ (346 aa) initn: 2191 init1: 2191 opt: 2191 Z-score: 1888.9 bits: 358.2 E(): 1.6e-96 Smith-Waterman score: 2191; 99.711% identity (99.711% similar) in 346 aa overlap (65-410:1-346) 40 50 60 70 80 90 KIAA04 SCPSQPPSSLALSLSPTPSDFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPF :::::::::::::::::::::::::::::: gi|194 MRFSPDVALAVSTTPAVLPTTNIQPVGTPF 10 20 30 100 110 120 130 140 150 KIAA04 EELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATA 40 50 60 70 80 90 160 170 180 190 200 210 KIAA04 TPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTP 100 110 120 130 140 150 220 230 240 250 260 270 KIAA04 RLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPE 160 170 180 190 200 210 280 290 300 310 320 330 KIAA04 VPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAID :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: gi|194 VPVSGGPSGDFELPEEETTQPDIANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAID 220 230 240 250 260 270 340 350 360 370 380 390 KIAA04 SGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 SGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ 280 290 300 310 320 330 400 410 KIAA04 ASVTYQKPDKQEEFYA :::::::::::::::: gi|194 ASVTYQKPDKQEEFYA 340 >>gi|109000859|ref|XP_001092729.1| PREDICTED: similar to (498 aa) initn: 1631 init1: 1631 opt: 2191 Z-score: 1886.8 bits: 358.3 E(): 2.2e-96 Smith-Waterman score: 2191; 86.925% identity (90.557% similar) in 413 aa overlap (1-410:87-498) 10 20 KIAA04 LAVPSSFLSSFLGKL-GKERGLGDLILMAI : .: .: . :. : .: .. . . gi|109 AHSAAWYSFWGAAHGAGAGTGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPV 60 70 80 90 100 110 30 40 50 60 70 80 KIAA04 AYLGSSCP-SQPPSSLALSLSPTPSD-FEQESGIETAMRFSPDVALAVSTTPAVLPTTNI ::. : : . : : . : ::::::::::::::::::::::::::::::::: gi|109 DLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNI 120 130 140 150 160 170 90 100 110 120 130 140 KIAA04 QPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATV :::::::::::::::: ::::::::::::::::::::::.::: ::::::.:: :::::: gi|109 QPVGTPFEELPSERPTPEPATSPLVVTEVPEEPSQRATTISTTTATTAATTTGAPTVATV 180 190 200 210 220 230 150 160 170 180 190 200 KIAA04 PATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVL :::: : :::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|109 PATV-TRRPSTPAAPPFTATTAVVRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVL 240 250 260 270 280 290 210 220 230 240 250 260 KIAA04 DTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLT 300 310 320 330 340 350 270 280 290 300 310 320 KIAA04 TIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPG ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|109 TIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSSPPGTLPKGARPGPG 360 370 380 390 400 410 330 340 350 360 370 380 KIAA04 LLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSY 420 430 440 450 460 470 390 400 410 KIAA04 TLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::: gi|109 TLEEPKQASVTYQKPDKQEEFYA 480 490 >>gi|194207786|ref|XP_001500236.2| PREDICTED: similar to (403 aa) initn: 2098 init1: 2098 opt: 2098 Z-score: 1808.4 bits: 343.5 E(): 5e-92 Smith-Waterman score: 2098; 92.416% identity (96.348% similar) in 356 aa overlap (55-410:48-403) 30 40 50 60 70 80 KIAA04 ILMAIAYLGSSCPSQPPSSLALSLSPTPSDFEQESGIETAMRFSPDVALAVSTTPAVLPT ::::::::::::::::.::::::::::::: gi|194 RPVDLEGSGDDDPFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDAALAVSTTPAVLPT 20 30 40 50 60 70 90 100 110 120 130 140 KIAA04 TNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTV .::::::::::: ::::: :::::: :::::::::::::::.:: ::::::.:: ::. gi|194 MDIQPVGTPFEELTSERPTPEPATSPPVVTEVPEEPSQRATTISTPTATTAATTTGAPTA 80 90 100 110 120 130 150 160 170 180 190 200 KIAA04 ATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTA ::::::::::.:: ::::: ::::.:.::::.::::::::::.:::::::: .::::::. gi|194 ATVPATVATAAPSIPAAPPSTATTSVVRTTGIRRLLPLPLTTAATARATTPAVPSPPTTV 140 150 160 170 180 190 210 220 230 240 250 260 KIAA04 AVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPET ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::. gi|194 AVLDTEAPTPRLVSTATSRPRALPRPSTTQEPDIPERSTLPLGTTAPGPTEVAQTPTPES 200 210 220 230 240 250 270 280 290 300 310 320 KIAA04 FLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARP :::::::: ::::::::::::::::::::::::::::::::::::: : ::::::::::: gi|194 FLTTIRDEREVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSPPPGTLPKGARP 260 270 280 290 300 310 330 340 350 360 370 380 KIAA04 GPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDE 320 330 340 350 360 370 390 400 410 KIAA04 GSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::: gi|194 GSYTLEEPKQASVTYQKPDKQEEFYA 380 390 400 >>gi|119888633|ref|XP_875616.2| PREDICTED: similar to Sy (442 aa) initn: 2084 init1: 2084 opt: 2085 Z-score: 1796.7 bits: 341.5 E(): 2.2e-91 Smith-Waterman score: 2085; 82.082% identity (89.104% similar) in 413 aa overlap (1-410:30-442) 10 20 30 KIAA04 LAVPSSFLSSFLGKL-GKERGLGDLILMAIA : .: .: . :. : .: .. . . gi|119 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD 10 20 30 40 50 60 40 50 60 70 80 KIAA04 YLGSSCP-SQPPSSLALSLSPTPSD-FEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ ::. : : . : : . : ::::::::::::::::::::.::::::::: .:: gi|119 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAMSTTPAVLPTMDIQ 70 80 90 100 110 120 90 100 110 120 130 140 KIAA04 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP ::::::::::::::: :::::: .::::::::::::::::: :::.::.:: ::::::: gi|119 PVGTPFEELPSERPTPEPATSPPLVTEVPEEPSQRATTVSTPTATTTATTTGPPTVATVP 130 140 150 160 170 180 150 160 170 180 190 200 KIAA04 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD ::::::.:: ::::: .:::.:.:::::::::::::::.:::::::: .::::::.:::: gi|119 ATVATAVPSIPAAPPSAATTSVVRTTGVRRLLPLPLTTAATARATTPAVPSPPTTVAVLD 190 200 210 220 230 240 210 220 230 240 250 260 KIAA04 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT ::::::::::::::::::::::::::.:::::.::::::::::::::::::::::.:::: gi|119 TEAPTPRLVSTATSRPRALPRPATTQKPDIPEKSTLPLGTTAPGPTEVAQTPTPESFLTT 250 260 270 280 290 300 270 280 290 300 310 320 KIAA04 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL ::::::.:::::::::::: ::::::::::::::::::: :: : :::::::::.::::: gi|119 IRDEPEMPVSGGPSGDFELSEEETTQPDTANEVVAVGGAEAKPSPPPGTLPKGAHPGPGL 310 320 330 340 350 360 330 340 350 360 370 380 KIAA04 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT 370 380 390 400 410 420 390 400 410 KIAA04 LEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::: gi|119 LEEPKQASVTYQKPDKQEEFYA 430 440 >>gi|73950489|ref|XP_544449.2| PREDICTED: similar to syn (591 aa) initn: 2067 init1: 2067 opt: 2067 Z-score: 1779.6 bits: 338.8 E(): 2e-90 Smith-Waterman score: 2067; 91.573% identity (95.787% similar) in 356 aa overlap (55-410:236-591) 30 40 50 60 70 80 KIAA04 ILMAIAYLGSSCPSQPPSSLALSLSPTPSDFEQESGIETAMRFSPDVALAVSTTPAVLPT ::::::::::::::::::.::::: ::::: gi|739 RPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVAMAVSTTAAVLPT 210 220 230 240 250 260 90 100 110 120 130 140 KIAA04 TNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTV ..::::::::::::::.:: :::::: :::::::::::::::.:: : ::::..: :: gi|739 VDIQPVGTPFEELPSEHPTPEPATSPPVVTEVPEEPSQRATTISTPTAPTAATTAGALTV 270 280 290 300 310 320 150 160 170 180 190 200 KIAA04 ATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTA ::::::::::.:: ::::: ::::.:::::::::::::::::.:::::::: :::::::. gi|739 ATVPATVATAVPSIPAAPPSTATTSVIRTTGVRRLLPLPLTTAATARATTPAAPSPPTTV 330 340 350 360 370 380 210 220 230 240 250 260 KIAA04 AVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPET :::::::::::.:::::::::::::::::::::.::.:::::::::::::::::::: :. gi|739 AVLDTEAPTPRMVSTATSRPRALPRPATTQEPDLPEKSTLPLGTTAPGPTEVAQTPTLES 390 400 410 420 430 440 270 280 290 300 310 320 KIAA04 FLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARP ::::::::::::::::::::::::::::::::::::::::::::: : ::::::::::: gi|739 VLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSPPPGTLPKGARP 450 460 470 480 490 500 330 340 350 360 370 380 KIAA04 GPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDE 510 520 530 540 550 560 390 400 410 KIAA04 GSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::: gi|739 GSYTLEEPKQASVTYQKPDKQEEFYA 570 580 590 410 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 23:17:16 2009 done: Wed Mar 4 23:21:58 2009 Total Scan time: 1511.870 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]