# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01596.fasta.huge -Q ../query/KIAA0468.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0468, 410 aa
 vs ./tmplib.23147 library

1987095 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.4222+/-0.00939; mu= -12.1538+/- 0.631
 mean_var=472.4139+/-112.703, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.059008

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0754  ( 1174 res)   hh06485                    (1174)  267 37.2  0.0062


>>KIAA0754  ( 1174 res)   hh06485                         (1174 aa)
 initn: 372 init1: 125 opt: 267  Z-score: 144.5  bits: 37.2 E(): 0.0062
Smith-Waterman score: 267;  28.239% identity (53.821% similar) in 301 aa overlap (42-324:703-996)

              20        30        40        50        60           
KIAA04 LGKLGKERGLGDLILMAIAYLGSSCPSQPPSSLALSLSPTPSDFEQESGIETAMRFS---
                                     ..::...  :  :   :. .  :       
KIAA07 VSSPEETAPAVAAAITQEGMSAVAGFSPEWAALAITVPITEEDGTPEGPVTPATTVHAPE
            680       690       700       710       720       730  

        70        80        90        100        110       120     
KIAA04 -PDVALAVSTTPAVLPTTNIQPVGTPFEEL-PSER-PTLEPATSPLVVTEVPEEPSQRAT
        ::.: .  .::   :..    : :: :   :.   :: :  ::: ...  ::::.. :.
KIAA07 EPDTAAVRVSTPEE-PASPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPPEEPTSPAA
            740        750       760       770       780       790 

         130        140       150       160       170       180    
KIAA04 TVSTTMA-TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPL
       .: :    :. :...  :   : ::. :. ::  :..:  .:. .  . :.    .: : 
KIAA07 AVPTPEEPTSPAAAVPTPEEPTSPAA-AVPTPEEPTSPA-AAVPTPEEPTSPAAAVPTPE
             800       810        820        830       840         

          190        200       210       220       230       240   
KIAA04 TTVATARAT-TPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERST
         .. : :. ::: :. :. :::   : :.   ... : .  :.: ::.   :.    ..
KIAA07 EPTSPAAAVPTPEEPASPA-AAVPTPEEPASPAAAVPTPEEPAFPAPAVPT-PEESASAA
     850       860        870       880       890        900       

           250       260          270         280        290       
KIAA04 LPLGTTAPGPTEVAQTPTPE---TFLTTIR--DEPEVPVSGGPSGDFELPE-EETTQP--
       . . :   . . .: .:::    .: ...   .::  :... :.    .   :: :.:  
KIAA07 VAVPTPEESASPAAAVPTPAESASFAAVVATLEEPTSPAASVPTPAAMVATLEEFTSPAA
       910       920       930       940       950       960       

           300       310       320       330       340       350   
KIAA04 --DTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEV
          :..: .....:...   :  : : .: :                             
KIAA07 SVPTSEEPASLAAAVSNPEEP--TSPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPTPE
       970       980         990      1000      1010      1020     

           360       370       380       390       400       410   
KIAA04 LVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA   
                                                                   
KIAA07 EPASPAAAVSNLEEPASPAAAVPTPEVAAIPAASVPTPEVPAIPAAAVPPMEEVSPIGVP
        1030      1040      1050      1060      1070      1080     




410 residues in 1 query   sequences
1987095 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:02 2008 done: Thu Dec 18 15:23:02 2008
 Total Scan time:  0.410 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]