hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03505917/chunk_1/iprscan-20080502-03505917.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0466 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 247.7 9.8e-70 8 SM00406 87.2 1.9e-21 4 SM00408 31.1 0.00015 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/8 47 162 .. 1 58 [] 37.0 2.5e-06 SM00408 1/4 53 147 .. 1 56 [] 3.9 2.2 SM00406 1/4 57 142 .. 1 76 [] 16.9 0.06 SM00409 2/8 172 295 .. 1 58 [] 36.5 3.7e-06 SM00406 2/4 182 268 .. 1 76 [] 33.7 2.6e-05 SM00409 3/8 307 425 .. 1 58 [] 19.6 0.44 SM00408 2/4 313 403 .. 1 56 [] 13.7 0.21 SM00409 4/8 437 559 .. 1 58 [] 32.4 6.2e-05 SM00408 3/4 443 538 .. 1 56 [] 7.1 1 SM00406 3/4 447 533 .. 1 76 [] 6.5 0.66 SM00409 5/8 573 694 .. 1 58 [] 19.7 0.42 SM00409 6/8 706 831 .. 1 58 [] 38.6 8.2e-07 SM00406 4/4 716 804 .. 1 76 [] 30.2 0.00028 SM00409 7/8 843 967 .. 1 58 [] 37.7 1.5e-06 SM00408 4/4 849 945 .. 1 56 [] 6.5 1.2 SM00409 8/8 979 1129 .. 1 58 [] 26.2 0.0047 Alignments of top-scoring domains: SM00409: domain 1 of 8, from 47 to 162: score 37.0, E = 2.5e-06 *->pp.vtvkeGesvtLtC.as........titWy............... ++++ eG+ +t+ C++s+ +++ +++W+ ++++ + + + KIAA0466 47 EGpLYRTEGSHITIWCnVSgyqgpseqNFQWSiylpssperevqivs 93 ...............................LtI.nvtpeDsesgGtYtC + +++ + +++ ++++ + +++++ L+I+++++ D+ G+Y C KIAA0466 94 tmdssfpyaiytqrvrggkifiervqgnstlLHItDLQARDA---GEYEC 140 aat......sgsasseqgttLtVl<-* ++++ gs+s+ +L V KIAA0466 141 HTPstdkqyFGSYSA--KMNLVVI 162 SM00408: domain 1 of 4, from 53 to 147: score 3.9, E = 2.2 *->leGqsVtLtCpasgd...pvpnItWlk......gkplp......... eG +t+ C +sg++++ + n++W +++++ +++ ++ +++ KIAA0466 53 TEGSHITIWCNVSGYqgpSEQNFQWSIylpsspEREVQivstmdssf 99 .....................sgstLtiknvsleDsGlYtCvArNsvg<- + +++ ++++ ++ ++++ L+i++ + D+G+Y+C + KIAA0466 100 pyaiytqrvrggkifiervqgNSTLLHITDLQARDAGEYECHTPSTDK 147 * KIAA0466 - - SM00406: domain 1 of 4, from 57 to 142: score 16.9, E = 0.06 *->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy....... +t+ C +Sg++ ++++++ W Pss+ +++ + + +++ + KIAA0466 57 HITIWCNVSGYQGpseqNFQWSIYLPSSP--EREVQIVSTmdssfpy 101 .sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* y Rv + k ++r +n+ L+i++L++ D g Y C + KIAA0466 102 aIYTQRVRGGKIFIERVQGNSTLLHITDLQARDAGEYECHT 142 SM00409: domain 2 of 8, from 172 to 295: score 36.5, E = 3.7e-06 *->pp.vtvkeGesvtLtC.as.........titWy.............. p+++ +e ++++LtC++++ + +++ ++ W++++ + ++ + KIAA0466 172 PQtLHRVEQDPLELTCeVAsetiqhshlSVAWLrqkvgekpvevisl 218 ................................LtI.nvtpeDsesgGtYt +++ ++++ ++++ + + ++ ++++ +LtI +++p+D+ G+++ KIAA0466 219 srdfmlhssseyaqrqslgevrldklgrttfrLTIfHLQPSDQ---GEFY 265 Caat............sgsasseqgttLtVl<-* C+a +++++ + s +g+ + V+ KIAA0466 266 CEAAewiqdpdgswyaMTRKRS-EGAVVNVQ 295 SM00406: domain 2 of 4, from 182 to 268: score 33.7, E = 2.6e-05 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... ++L+C++ t ++++ v W+rq+ + k++e++ +++ KIAA0466 182 PLELTCEVASETIqhshlSVAWLRQKV----GEKPVEVISLsrdfml 224 .........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar< +++++ ++++ g v + k +++++ Lti L+p+D+g +yC+ KIAA0466 225 hssseyaqrQSLGEVRLDKL-----GRTTFRLTIFHLQPSDQGEFYCEA 268 -* KIAA0466 - - SM00409: domain 3 of 8, from 307 to 425: score 19.6, E = 0.44 *->pp.vtvkeGesvtLtC.as.........titWy.............. ++ + +Ge+v+++C + + ++ ++W +++ + +++ KIAA0466 307 TEkRLHTVGEPVEFRCiLEaqnvpdryfAVSWAfnssliatmgpnav 353 ...........................LtI.nvtpeDsesgGtYtCaat. + ++ ++ +++ + + +++ L I +++ eDs G Y C++t KIAA0466 354 pvlnsefahreargqlkvakesdsvfvLKIyHLRQEDS---GKYNCRVTe 400 ...........sgsasseqgttLtVl<-* + ++ ++ ++ s+ +++ ++Vl KIAA0466 401 rektvtgefidKESKRP-KNIPIIVL 425 SM00408: domain 2 of 4, from 313 to 403: score 13.7, E = 0.21 *->leGqsVtLtCpasgdpvpn....ItWlk.gkplp............. G++V+++C+ ++ vp++ ++W ++++ +++ +++ + +++ KIAA0466 313 TVGEPVEFRCILEAQNVPDryfaVSWAFnSSLIAtmgpnavpvlnse 359 .................sgstLtiknvsleDsGlYtCvArNsvg<-* +++ +++ + ++++s L+i + + eDsG+Y C+++ + KIAA0466 360 fahreargqlkvakesdSVFVLKIYHLRQEDSGKYNCRVTEREK 403 SM00409: domain 4 of 8, from 437 to 559: score 32.4, E = 6.2e-05 *->pp.vtvkeGesvtLtC.as.........titWy.............. + + eGe+++++C++ + + + + ++ W ++++++++ KIAA0466 437 SNaSVILEGEDLRFSCsVRtagrpqgrfSVIWQlvdrqnrrsnimwl 483 ................................LtI.nvtpeDsesgGtYt +++++ +++++ +++ ++ + + ++++ +L I n ++eD+ G Y KIAA0466 484 drdgtvqpgssywerssfggvqmeqvqpnsfsLGIfNSRKEDE---GQYE 530 Caat............sgsasseqgttLtVl<-* C +t + ++ g+ + +t ++++ KIAA0466 531 CHVTewvravdgewqiVGERRA--STPISIT 559 SM00408: domain 3 of 4, from 443 to 538: score 7.1, E = 1 *->leGqsVtLtCpasgdpvpn....ItWlk.gkplp............. leG+++++ C ++ + p+++ ++ W + + +++ +++++ KIAA0466 443 LEGEDLRFSCSVRTAGRPQgrfsVIWQLvDRQNRrsnimwldrdgtv 489 ......................sgstLtiknvsleDsGlYtCvArNsvg< +++++ ++++ ++ + ++ ++++ +L i n ++eD+G Y+C ++ v KIAA0466 490 qpgssywerssfggvqmeqvqpNSFSLGIFNSRKEDEGQYECHVTEWVR 538 -* KIAA0466 - - SM00406: domain 3 of 4, from 447 to 533: score 6.5, E = 0.66 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... +++ sC++ + ++++ v W+ ++ + + + +++++ KIAA0466 447 DLRFSCSVRTAGRpqgrfSVIWQLVDR-----QNRRSNIMWldrdgt 488 .....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* ++++sy +R ++ + ++ n++sL i n r eD+g Y C + KIAA0466 489 vqpgsSYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHV 533 SM00409: domain 5 of 8, from 573 to 694: score 19.7, E = 0.42 *->pp.vtvkeGesvtLtC.as.........titWy.............. p+vt + +s L+C ++++ + + ++tW+ ++ ++ ++ + KIAA0466 573 TPgVTYS--DSFDLQCiIKphypawvpvSVTWRfqpvgtvefhdlvt 617 ................................LtI.nvtpeDsesgGtYt +++++ + ++++++ ++++ + ++++ +L I++++ + G Y+ KIAA0466 618 ftrdggvqwgdrsssfrtrtaiekaessnnvrLSIsRASDTEA---GKYQ 664 Caat............sgsasseqgttLtVl<-* C+a+ +++ +++ ++ + +s + +++Vl KIAA0466 665 CVAElwrknynntwtrLAERTS-NLLEIRVL 694 SM00409: domain 6 of 8, from 706 to 831: score 38.6, E = 8.2e-07 *->pp.vtvkeGesvtLtC.as.........titWy.............. +++t +e +++L+C++++ ++ +++ + Wy +++++ +++ + KIAA0466 706 KRtLTLVENKPIQLNCsVKsqtsqnshfAVLWYvhkpsdadgklilk 752 ..................................LtI.nvtpeDsesgGt +++++ ++ + + + + ++ +++ +Lt+++++++Ds G KIAA0466 753 tthnsafeygtyaeeeglrarlqferhvsgglfsLTVqRAEVSDS---GS 799 YtCaat.............sgsasseqgttLtVl<-* Y+C ++ +++ + + ++s+ t++tV+ KIAA0466 800 YYCHVEewllspnyawyklAEEVSG--RTEVTVK 831 SM00406: domain 4 of 4, from 716 to 804: score 30.2, E = 0.00028 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... + L C+++ t+++++ v W+ ++Ps + ++++ +++++ KIAA0466 716 PIQLNCSVKSQTSqnshfAVLWYVHKPS----DADGKLILKtthnsa 758 ..........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar + ++ +++++++R+++ + s++ +sLt ++ +++D+g YyC + KIAA0466 759 feygtyaeeeGLRARLQFERHV----SGGLFSLTVQRAEVSDSGSYYCHV 804 <-* KIAA0466 - - SM00409: domain 7 of 8, from 843 to 967: score 37.7, E = 1.5e-06 *->pp.vtvkeGesvtLtC.as.........titWy.............. +++++v e v+L+C + + ++ ++ + W+ +++++ + + + KIAA0466 843 QGnLSVLETRQVQLECvVLnrtsitsqlMVEWFvwkpnhperetvar 889 .................................LtI.nvtpeDsesgGtY +++ + + + + +++ +++ + +++++ +L I+nv ++Ds GtY KIAA0466 890 lsrdatfhygeqaaknnlkgrlhlespspgvyrLFIqNVAVQDS---GTY 936 tCaat............sgsasseqgttLtVl<-* C ++ +++++ + ++++ t LtV KIAA0466 937 SCHVEewlpspsgmwykRAEDTA-GQTALTVM 967 SM00408: domain 4 of 4, from 849 to 945: score 6.5, E = 1.2 *->leGqsVtLtCpasgdpvpn....ItWlk..gkplp............ le ++V+L+C + ++ +++ + W+ + + ++++ + +++ + KIAA0466 849 LETRQVQLECVVLNRTSITsqlmVEWFVwkPNHPEretvarlsrdat 895 .......................sgstLtiknvsleDsGlYtCvArNsvg + +++ +++ +++ + ++++++ +L i+nv++ DsG+Y+C ++ KIAA0466 896 fhygeqaaknnlkgrlhlespspGVYRLFIQNVAVQDSGTYSCHVEEWLP 945 <-* KIAA0466 - - SM00409: domain 8 of 8, from 979 to 1129: score 26.2, E = 0.0047 *->pp.vtvkeGesvtLtC.as.........titWy.............. p+ tv+e +L C++ + ++ ++ + Wy+ +++ ++++++++ KIAA0466 979 VPnATVSEKAAFQLDCsIVsrssqdsrfAVAWYslrtkaggkrsspg 1025 .................................................. + + +++++++++ ++ + +++ ++ +++ ++ + KIAA0466 1026 leeqeeereeeeeedddddddptertallsvgpdavfgpegspwegrlrf 1075 .........LtI.nvtpeDsesgGtYtCaat............sgsasse ++ ++ +Lt+ +++p+D+ G+Y C ++ +++ + + + +s KIAA0466 1076 qrlspvlyrLTVlQASPQDT---GNYSCHVEewlpspqkewyrLTEEES- 1121 qgttLtVl<-* ++ ++Vl KIAA0466 1122 APIGIRVL 1129 //