hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03505917/chunk_1/iprscan-20080502-03505917.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0466 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00047.15.ls Immunoglobulin domain 153.6 4.7e-43 8 PF00047.15.fs Immunoglobulin domain 145.3 1.5e-40 8 PF07686.7.fs Immunoglobulin V-set domain 126.5 4.3e-35 7 PF07686.7.ls Immunoglobulin V-set domain 112.8 9.2e-31 5 PF07679.6.fs Immunoglobulin I-set domain 42.3 1e-11 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.fs 1/7 40 162 .. 1 141 [] 24.0 2.6e-06 PF07686.7.ls 1/5 40 162 .. 1 141 [] 25.9 0.00012 PF00047.15.ls 1/8 55 142 .. 1 65 [] 14.8 0.25 PF07686.7.ls 2/5 165 295 .. 1 141 [] 25.4 0.00014 PF07686.7.fs 2/7 165 266 .. 1 122 [. 25.4 1.1e-06 PF00047.15.fs 2/8 180 268 .. 1 65 [] 20.6 6.7e-05 PF00047.15.ls 2/8 180 268 .. 1 65 [] 22.6 0.0013 PF00047.15.ls 3/8 315 398 .. 1 65 [] 14.1 0.29 PF00047.15.fs 4/8 445 533 .. 1 65 [] 13.6 0.0055 PF00047.15.ls 4/8 445 533 .. 1 65 [] 15.6 0.17 PF07686.7.fs 5/7 699 804 .. 1 124 [. 44.2 5.5e-12 PF07686.7.ls 4/5 699 831 .. 1 141 [] 44.2 4.1e-10 PF00047.15.ls 6/8 714 804 .. 1 65 [] 35.6 1.6e-07 PF00047.15.fs 6/8 714 804 .. 1 65 [] 33.6 1.8e-08 PF07686.7.ls 5/5 836 967 .. 1 141 [] 12.4 0.0028 PF00047.15.fs 7/8 851 940 .. 1 65 [] 26.8 1.4e-06 PF00047.15.ls 7/8 851 940 .. 1 65 [] 28.8 1.8e-05 PF00047.15.fs 8/8 1084 1102 .. 47 65 .] 14.8 0.0025 Alignments of top-scoring domains: PF07686.7.fs: domain 1 of 7, from 40 to 162: score 24.0, E = 2.6e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss q qvt +++ ++ eG +t+ C +s ++ KIAA0466 40 QRQVTV-QEG------------PLYRTEGSHITIWCNVS----GYQG 69 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +s +++W+ p ++ +++ ++s + s+++ ++ r +g + KIAA0466 70 PSEQ-NFQWSI-YLPSSPEREV--QIVSTMDSSFPYAIYTQRVRGGKIFI 115 gnpskgdfsLtIsnlqlsDsGtYyCavsns...nelvfgggtrLtVl<-* ++++ L+I++lq+ D G Y C+ ++++++++++ + ++L+V KIAA0466 116 ERVQGNSTLLHITDLQARDAGEYECHTPSTdkqYFGSYSAKMNLVVI 162 PF07686.7.ls: domain 1 of 5, from 40 to 162: score 25.9, E = 0.00012 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss q qvt +++ ++ eG +t+ C +s ++ KIAA0466 40 QRQVTV-QEG------------PLYRTEGSHITIWCNVS----GYQG 69 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +s +++W+ p ++ +++ ++s + s+++ ++ r +g + KIAA0466 70 PSEQ-NFQWSI-YLPSSPEREV--QIVSTMDSSFPYAIYTQRVRGGKIFI 115 gnpskgdfsLtIsnlqlsDsGtYyCavsns...nelvfgggtrLtVl<-* ++++ L+I++lq+ D G Y C+ ++++++++++ + ++L+V KIAA0466 116 ERVQGNSTLLHITDLQARDAGEYECHTPSTdkqYFGSYSAKMNLVVI 162 PF00047.15.ls: domain 1 of 8, from 55 to 142: score 14.8, E = 0.25 *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty G++ t+ C vs+ gp++ +++W ++ ++ +++ +s+++++ y KIAA0466 55 GSHITIWCNVSgYQGPSEQNFQWSIYLPsSPeREVQIVSTMDSSFPY 101 qt....................sLtitnvtpeDggtYtCvv<-* + +++ ++++ ++ ++++++L+it+++ D+g+Y C+ KIAA0466 102 AIytqrvrggkifiervqgnstLLHITDLQARDAGEYECHT 142 PF07686.7.ls: domain 2 of 5, from 165 to 295: score 25.4, E = 0.00014 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++q t+ p ++ +e + ++L+C + s++ KIAA0466 165 SLQTTA-MPQ------------TLHRVEQDPLELTCEVA-----SET 193 ssgtf.siyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtl ++++ s+ W r q+ g++p ++i + ++ + + ++++ r +l KIAA0466 194 IQHSHlSVAWLR-QKVGEKPVEVI------SLSRDFMLHSSSEYAQRQSL 236 sgnps....kgdfsLtIsnlqlsDsGtYyCavsns..........nelvf + ++ ++++f LtI +lq+sD G yC ++++++ + KIAA0466 237 GEVRLdklgRTTFRLTIFHLQPSDQGEFYCEAAEWiqdpdgswyaMTRKR 286 gggtrLtVl<-* +g ++ V KIAA0466 287 SEGAVVNVQ 295 PF07686.7.fs: domain 2 of 7, from 165 to 266: score 25.4, E = 1.1e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++q t+ p ++ +e + ++L+C + s++ KIAA0466 165 SLQTTA-MPQ------------TLHRVEQDPLELTCEVA-----SET 193 ssgtf.siyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtl ++++ s+ W r q+ g++p ++i + ++ + + ++++ r +l KIAA0466 194 IQHSHlSVAWLR-QKVGEKPVEVI------SLSRDFMLHSSSEYAQRQSL 236 sgnps....kgdfsLtIsnlqlsDsGtYyC<-* + ++ ++++f LtI +lq+sD G yC KIAA0466 237 GEVRLdklgRTTFRLTIFHLQPSDQGEFYC 266 PF00047.15.fs: domain 2 of 8, from 180 to 268: score 20.6, E = 6.7e-05 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ LtC+v ++ +++ +v Wlr++ + + +++ s++ ++ KIAA0466 180 QDPLELTCEVAseTIQHSHLSVAWLRQKVgEKpVEVISLSRDFMLHS 226 yqt....................sLtitnvtpeDggtYtCvv<-* ++ ++++ ++ + ++ ++++ +Lti ++p+D g+++C++ KIAA0466 227 SSEyaqrqslgevrldklgrttfRLTIFHLQPSDQGEFYCEA 268 PF00047.15.ls: domain 2 of 8, from 180 to 268: score 22.6, E = 0.0013 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ LtC+v ++ +++ +v Wlr++ + + +++ s++ ++ KIAA0466 180 QDPLELTCEVAseTIQHSHLSVAWLRQKVgEKpVEVISLSRDFMLHS 226 yqt....................sLtitnvtpeDggtYtCvv<-* ++ ++++ ++ + ++ ++++ +Lti ++p+D g+++C++ KIAA0466 227 SSEyaqrqslgevrldklgrttfRLTIFHLQPSDQGEFYCEA 268 PF00047.15.ls: domain 3 of 8, from 315 to 398: score 14.1, E = 0.29 *->GesvtLtCsvs..gfgppdvtvtWlrngklt.gvlvtssenngdsty Ge+v ++C ++ + v+W +n+ l+ + ++ ++ + KIAA0466 315 GEPVEFRCILEaqNVPDRYFAVSWAFNSSLIaTMGPNAVPVLNSEFA 361 qt................sLtitnvtpeDggtYtCvv<-* ++ +++ + +++++ +L i +++eD+g Y C+v KIAA0466 362 HReargqlkvakesdsvfVLKIYHLRQEDSGKYNCRV 398 PF00047.15.fs: domain 4 of 8, from 445 to 533: score 13.6, E = 0.0055 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst Ge+++++Csv++ g +v W+ + + +++ +++++ + KIAA0466 445 GEDLRFSCSVRtaGRPQGRFSVIWQLVDRqNRrSNIMWLDRDGTVQP 491 yqt....................sLtitnvtpeDggtYtCvv<-* + ++++ ++ + ++ ++++ sL i n ++eD+g Y C+v KIAA0466 492 GSSywerssfggvqmeqvqpnsfSLGIFNSRKEDEGQYECHV 533 PF00047.15.ls: domain 4 of 8, from 445 to 533: score 15.6, E = 0.17 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst Ge+++++Csv++ g +v W+ + + +++ +++++ + KIAA0466 445 GEDLRFSCSVRtaGRPQGRFSVIWQLVDRqNRrSNIMWLDRDGTVQP 491 yqt....................sLtitnvtpeDggtYtCvv<-* + ++++ ++ + ++ ++++ sL i n ++eD+g Y C+v KIAA0466 492 GSSywerssfggvqmeqvqpnsfSLGIFNSRKEDEGQYECHV 533 PF07686.7.fs: domain 5 of 7, from 699 to 804: score 44.2, E = 5.5e-12 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +qv+ + r +t +e + + L+C+++ + +s+ KIAA0466 699 KLQVSK-SKR------------TLTLVENKPIQLNCSVK---SQTSQ 729 ssgtfsiyWyrqqpp.gkgpeliiisyysyystsegngtvgerfkgrvtl +s+ + Wy ++p++ +li + ++ ++g+ +e ++ r ++ KIAA0466 730 NSHF-AVLWYV-HKPsDADGKLIL-KTTHNSAFEYGTYAEEEGLRARLQF 776 sgnpskgdfsLtIsnlqlsDsGtYyCav<-* ++ s+g fsLt + +++sDsG YyC+v KIAA0466 777 ERHVSGGLFSLTVQRAEVSDSGSYYCHV 804 PF07686.7.ls: domain 4 of 5, from 699 to 831: score 44.2, E = 4.1e-10 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +qv+ + r +t +e + + L+C+++ + +s+ KIAA0466 699 KLQVSK-SKR------------TLTLVENKPIQLNCSVK---SQTSQ 729 ssgtfsiyWyrqqpp.gkgpeliiisyysyystsegngtvgerfkgrvtl +s+ + Wy ++p++ +li + ++ ++g+ +e ++ r ++ KIAA0466 730 NSHF-AVLWYV-HKPsDADGKLIL-KTTHNSAFEYGTYAEEEGLRARLQF 776 sgnpskgdfsLtIsnlqlsDsGtYyCavsns..........nelvfgggt ++ s+g fsLt + +++sDsG YyC+v +++ + + g t KIAA0466 777 ERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWllspnyawykLAEEVSGRT 826 rLtVl<-* ++tV+ KIAA0466 827 EVTVK 831 PF00047.15.ls: domain 6 of 8, from 714 to 804: score 35.6, E = 1.6e-07 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ L+Csv+++ + +++ v W++ +++ +g l+ +++n+ KIAA0466 714 NKPIQLNCSVKsqTSQNSHFAVLWYVHKPsDAdGKLILKTTHNSAFE 760 yqt......................sLtitnvtpeDggtYtCvv<-* y+t ++++ + + + +++ +++ sLt+++++ +D+g+Y+C+v KIAA0466 761 YGTyaeeeglrarlqferhvsgglfSLTVQRAEVSDSGSYYCHV 804 PF00047.15.fs: domain 6 of 8, from 714 to 804: score 33.6, E = 1.8e-08 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ L+Csv+++ + +++ v W++ +++ +g l+ +++n+ KIAA0466 714 NKPIQLNCSVKsqTSQNSHFAVLWYVHKPsDAdGKLILKTTHNSAFE 760 yqt......................sLtitnvtpeDggtYtCvv<-* y+t ++++ + + + +++ +++ sLt+++++ +D+g+Y+C+v KIAA0466 761 YGTyaeeeglrarlqferhvsgglfSLTVQRAEVSDSGSYYCHV 804 PF07686.7.ls: domain 5 of 5, from 836 to 967: score 12.4, E = 0.0028 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + ++q ++ ++v e v L C + +++s KIAA0466 836 RLRLSQ-AQG------------NLSVLETRQVQLECVVL----NRTS 865 ssgtfsiyWyrqqppgkgpeliii.syysyystsegngtvgerfkgrvtl ++ ++ W+ +p+++ ++ + + + ++ g + ++++kgr + KIAA0466 866 ITSQLMVEWFV-WKPNHPERETVArLSRDATFHY-GEQAAKNNLKGRLH- 912 sgnpskgdfsLtIsnlqlsDsGtYyCavsns..........nelvfgggt +ps g + L I+n+ + DsGtY C+v +++++ + g t KIAA0466 913 LESPSPGVYRLFIQNVAVQDSGTYSCHVEEWlpspsgmwykRAEDTAGQT 962 rLtVl<-* LtV+ KIAA0466 963 ALTVM 967 PF00047.15.fs: domain 7 of 8, from 851 to 940: score 26.8, E = 1.4e-06 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvt.ssenngds v L C v ++ + +++ +v W+++++++++ ++v + s++ + + KIAA0466 851 TRQVQLECVVLnrTSITSQLMVEWFVWKPnHPeRETVArLSRDATFH 897 tyqt....................sLtitnvtpeDggtYtCvv<-* + + +++ +++ + ++++++ +L i+nv +D+gtY+C+v KIAA0466 898 YGEQaaknnlkgrlhlespspgvyRLFIQNVAVQDSGTYSCHV 940 PF00047.15.ls: domain 7 of 8, from 851 to 940: score 28.8, E = 1.8e-05 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvt.ssenngds v L C v ++ + +++ +v W+++++++++ ++v + s++ + + KIAA0466 851 TRQVQLECVVLnrTSITSQLMVEWFVWKPnHPeRETVArLSRDATFH 897 tyqt....................sLtitnvtpeDggtYtCvv<-* + + +++ +++ + ++++++ +L i+nv +D+gtY+C+v KIAA0466 898 YGEQaaknnlkgrlhlespspgvyRLFIQNVAVQDSGTYSCHV 940 PF00047.15.fs: domain 8 of 8, from 1084 to 1102: score 14.8, E = 0.0025 *->sLtitnvtpeDggtYtCvv<-* +Lt+++++p+D+g+Y+C+v KIAA0466 1084 RLTVLQASPQDTGNYSCHV 1102 //