hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03453515/chunk_1/iprscan-20080502-03453515.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0464 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID) 172.4 2e-50 1 PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID) 174.3 2.9e-49 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00640.13.fs 1/1 112 255 .. 1 165 [] 172.4 2e-50 PF00640.13.ls 1/1 112 255 .. 1 165 [] 174.3 2.9e-49 Alignments of top-scoring domains: PF00640.13.fs: domain 1 of 1, from 112 to 255: score 172.4, E = 2e-50 *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk Fe+kY+Gs++Vp++ n+R++++ A++r++++ +kak+ KIAA0464 112 FEAKYVGSLDVPRP------NSRVEIVA-AMRRIRYE-----FKAKN 146 ikrikgsrgerqpgtkidLsistdgl.....klldekteaekevlhdhpl ik++k s + + +g+k++L+ +++ l ++++++++++ k++++++p+ KIAA0464 147 IKKKKVSIMVSVDGVKVILKKKKKLLllqkkEWTWDES---KMLVMQDPI 193 rkISFiavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkq ++I+++++ D++ dl++F+y ia+dga+++f+C+vF+++k k+ KIAA0464 194 YRIFYVSH--DSQ-DLKIFSY-------IARDGASNIFRCNVFKSKK-KS 232 lAediaqavGqAFevaYqeflra<-* +A++i+++vGqAFev++++ l++ KIAA0464 233 QAMRIVRTVGQAFEVCHKLSLQH 255 PF00640.13.ls: domain 1 of 1, from 112 to 255: score 174.3, E = 2.9e-49 *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk Fe+kY+Gs++Vp++ n+R++++ A++r++++ +kak+ KIAA0464 112 FEAKYVGSLDVPRP------NSRVEIVA-AMRRIRYE-----FKAKN 146 ikrikgsrgerqpgtkidLsistdgl.....klldekteaekevlhdhpl ik++k s + + +g+k++L+ +++ l ++++++++++ k++++++p+ KIAA0464 147 IKKKKVSIMVSVDGVKVILKKKKKLLllqkkEWTWDES---KMLVMQDPI 193 rkISFiavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkq ++I+++++ D++ dl++F+y ia+dga+++f+C+vF+++k k+ KIAA0464 194 YRIFYVSH--DSQ-DLKIFSY-------IARDGASNIFRCNVFKSKK-KS 232 lAediaqavGqAFevaYqeflra<-* +A++i+++vGqAFev++++ l++ KIAA0464 233 QAMRIVRTVGQAFEVCHKLSLQH 255 //