hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03435779/chunk_1/iprscan-20080502-03435779.nocrc
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Query sequence: KIAA0463
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00630 452.8 1.7e-131 1
SM00429 311.7 5.1e-89 4
SM00423 135.7 4.9e-36 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00630 1/1 119 561 .. 1 532 [] 452.8 1.7e-131
SM00423 1/3 579 629 .. 1 56 [] 55.3 7.9e-12
SM00423 2/3 724 771 .. 1 56 [] 36.6 3.3e-06
SM00423 3/3 872 925 .. 1 56 [] 43.8 2.3e-08
SM00429 1/4 926 1021 .. 1 111 [] 88.8 6.5e-22
SM00429 2/4 1022 1107 .. 1 111 [] 98.9 5.9e-25
SM00429 3/4 1109 1209 .. 1 111 [] 91.7 8.7e-23
SM00429 4/4 1211 1306 .. 1 111 [] 32.3 6.6e-05
Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 119 to 561: score 452.8, E = 1.7e-131
*->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
fnhl ++ ++g +yVGA Nr+y+L+ nl+ + ++tgp++d++s
KIAA0463 119 FNHLTVHQGTG--AVYVGAINRVYKLT-GNLTIQVAHKTGPEEDNKS 162
ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
c++ + +++ Cs+ +t+++N++++L++d+ +++L++
KIAA0463 163 CYP---------PLIVQP---CSEVLTLTNNVNKLLIIDYS---ENRLLA 197
CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
CG++++g+ C l++l+d ++il++++++ke++ls +++
KIAA0463 198 CGSLYQGV---CKLLRLDD----------LFILVEPSHKKEHYLSSVNKT 234
kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
+ +y++ ++s + ++ ++ g+ +g+ +f++ ls s++ p+ +s
KIAA0463 235 GTMYGVIVRSEGEDGKLFI---GTAVDGKQDYFPT--LS-SRKLPRDPES 278
lgttqdgfefefhslrttiydskwg.ydlnepnFVyaFeipesgdgdfVY
+ +++++++f+s+ ++i++++++ ++++++ ++y+F++ g fVY
KIAA0463 279 SAMLDYELHSDFVSSLIKIPSDTLAlVSHFDIFYIYGFAS-----GGFVY 323
FFFrEtaveainr.dcssekavvsRVARvCknDvGGqrlLqkkWtSFLKa
F++++++++ + + + +++ +++sR++R+Ck+D +k++S++ +
KIAA0463 324 FLTVQPETPEGVAiNSAGDLFYTSRIVRLCKDD--------PKFHSYVSL 365
rLnCsvpgkggvrefyFneLQavfllppGa.LArelgi.esddvlYgVFs
+ C+ + gv+ +++LQa++l++pG++LA+ +i+ +ddvl+++Fs
KIAA0463 366 PFGCT---RAGVE---YRLLQAAYLAKPGDsLAQAFNItSQDDVLFAIFS 409
qgqqtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpve
+gq+ p SA+CaF+++ In ++ + ++cy+g ++ +e
KIAA0463 410 KGQKQYH----HPPDDSALCAFPIRAINLQIKGRLQSCYQG----EGNLE 451
gnkvPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPl
+++ ++ +++ ++P+d+++++ d ++++++++P+
KIAA0463 452 ---LNWLLGKDV----------QCTKAPVPIDDNFCGLDINQPLGGSTPV 488
tgrPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvv
+g l++ ++r+Ts+a ++++g y V+F+GT +G+++K++
KIAA0463 489 EGLTLYTTS--RDRMTSVASYVYNG-------YSVVFVGTKSGKLKKIRA 529
srsssssssaglesvlleelqvfppgsepirdmvlsskk<-*
++ + v++e ++v ++gs+++rdm++s ++
KIAA0463 530 DGPPH-------GGVQYEMVSVLKDGSPILRDMAFSIDQ 561
SM00423: domain 1 of 3, from 579 to 629: score 55.3, E = 7.9e-12
*->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
C+qy t+C+eCl+++dp+ CgWC+++++C+r+ C q w
KIAA0463 579 SCEQY--TTCGECLSSGDPH-CGWCALHNMCSRRDKCQ------QAW 616
ssg....pssqCp<-*
+ + sqC
KIAA0463 617 EPNrfaaSISQCV 629
SM00423: domain 2 of 3, from 724 to 771: score 36.6, E = 3.3e-06
*->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
+Cs++ + C +C+ + + C+WC++++ Ct+ + C+ ++g r n
KIAA0463 724 NCSAH--QLCLSCVNSAFR--CHWCKYRNLCTHDpTTCSFQEG-RIN 765
wssgpssqCp<-*
+s Cp
KIAA0463 766 ISE----DCP 771
SM00423: domain 3 of 3, from 872 to 925: score 43.8, E = 2.3e-08
*->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
C++++ sC+ Cl a+ ++CgWCs+e+rCt +++C++ + ++w
KIAA0463 872 KCAAQR-ESCGLCLKADRKFECGWCSGERRCTLHQHCTS---PSSPW 914
ssg..pssqCp<-*
+++++++ +C+
KIAA0463 915 LDWssHNVKCS 925
SM00429: domain 1 of 4, from 926 to 1021: score 88.8, E = 6.5e-22
*->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
+P It+i sGp +GGt r+t++G nL+ d+s++ + v v+ +
KIAA0463 926 NPQITEILTVSGPPEGGT-RVTIHGVNLGLDFSEIAHHVQVA----G 967
vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
vpCt+lp +++ +++ivC+++++l+ g+ s+pvr+ ++g + +
KIAA0463 968 VPCTPLPGEYI---IAEQIVCEMGHALV---GTTSGPVRL--CIGECKPE 1009
vrtelsppspFtYv<-*
++t+ + +++t+v
KIAA0463 1010 FMTK--SHQQYTFV 1021
SM00429: domain 2 of 4, from 1022 to 1107: score 98.9, E = 5.9e-25
*->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
+P++++++P +Gp sGGt +t++G++L++ gs+v v++g +
KIAA0463 1022 NPSVLSLNPIRGPESGGT-MVTITGHYLGA-GSSVAVYLG------N 1060
vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
+ C+f + s+++ivC++Pp++n g g+vpv +v++d+++
KIAA0463 1061 QTCEFYGR------SMSEIVCVSPPSSN---GLGPVPV----SVSVDRAH 1097
vrtelsppspFtYv<-*
v++ +++F+Y
KIAA0463 1098 VDS----NLQFEYI 1107
SM00429: domain 3 of 4, from 1109 to 1209: score 91.7, E = 8.7e-23
*->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
dP+++ri+P+++++sG t +t++G nLd+ ++++++rv+ +G++
KIAA0463 1109 DPRVQRIEPEWSIASGHT-PLTITGFNLDV-IQEPRIRVKFNGKeS- 1152
evpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdn
+ C+++++ t+++C +P+ ++++++g +v+ ++ e+gf
KIAA0463 1153 VNVCKVVNT--------TTLTCLAPSLTTDYRpGLDTVERPD--EFGFVF 1192
ggvrtel.sppspFtYv<-*
+v+++l ++ F Y+
KIAA0463 1193 NNVQSLLiYNDTKFIYY 1209
SM00429: domain 4 of 4, from 1211 to 1306: score 32.3, E = 6.6e-05
*->dPvItrisPssGplsGGteritlcGknLds...dgsvvfvrvgvgGr
+P+++ +sP+ + + i l+GknL ++ + g ++v g
KIAA0463 1211 NPTFELLSPTGVLDQKPGSPIILKGKNLCPpasGGAKLNYTVLIG-- 1255
vWevpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf.
e+pC ++ s+t+++C+ P ++q + + v+v + v+ +
KIAA0463 1256 --ETPCAVTV-------SETQLLCEPPNLTGQ--HKVMVHVGG--MVFSp 1292
dnggvrtelsppspFtYv<-*
++ v ++ s +t
KIAA0463 1293 GSVSVISD----SLLTLP 1306
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